Detailed information NTG0460943

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HV049_RS20995
• Genome accession: NZ_CP056883
• Coordinates: 4267522..4268322 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain RHBSTW-00062
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4262522..4273322

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HV049_RS20960 (HV049_20965)	gspH	4262678..4263187 (+)	510	WP_021441218.1	type II secretion system minor pseudopilin GspH	-
HV049_RS20965 (HV049_20970)	gspI	4263190..4263555 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
HV049_RS20970 (HV049_20975)	gspJ	4263552..4264148 (+)	597	WP_023286045.1	type II secretion system minor pseudopilin GspJ	-
HV049_RS20975 (HV049_20980)	gspK	4264145..4265131 (+)	987	WP_021467522.1	type II secretion system minor pseudopilin GspK	-
HV049_RS20980 (HV049_20985)	gspL	4265118..4266311 (+)	1194	WP_181575753.1	type II secretion system protein GspL	-
HV049_RS20985 (HV049_20990)	-	4266304..4266789 (+)	486	WP_004151943.1	type II secretion system protein M	-
HV049_RS20990 (HV049_20995)	-	4266779..4267525 (+)	747	WP_004145897.1	type II secretion system protein N	-
HV049_RS20995 (HV049_21000)	pilD	4267522..4268322 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
HV049_RS21000 (HV049_21005)	hrpB	4268370..4270799 (-)	2430	WP_023286043.1	ATP-dependent helicase HrpB	-
HV049_RS21005 (HV049_21010)	thpR	4270872..4271408 (+)	537	WP_096106589.1	RNA 2',3'-cyclic phosphodiesterase	-
HV049_RS21010 (HV049_21015)	sfsA	4271408..4272124 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
HV049_RS21015 (HV049_21020)	dksA	4272287..4272742 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=460943 HV049_RS20995 WP_004145898.1 4267522..4268322(+) (pilD) [Klebsiella pneumoniae strain RHBSTW-00062]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=460943 HV049_RS20995 WP_004145898.1 4267522..4268322(+) (pilD) [Klebsiella pneumoniae strain RHBSTW-00062]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425