Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   JM964_RS09590 Genome accession   NZ_CP068708
Coordinates   1998395..1998844 (-) Length   149 a.a.
NCBI ID   WP_024414076.1    Uniprot ID   -
Organism   Streptococcus suis strain ID33329     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1993395..2003844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM964_RS09570 (JM964_09570) - 1993827..1994360 (-) 534 WP_044674700.1 histidine phosphatase family protein -
  JM964_RS09575 (JM964_09575) - 1994367..1994810 (-) 444 WP_002939955.1 dUTP diphosphatase -
  JM964_RS09580 (JM964_09580) - 1994911..1996695 (-) 1785 WP_202847573.1 ABC transporter ATP-binding protein -
  JM964_RS09585 (JM964_09585) - 1996696..1998402 (-) 1707 WP_044674696.1 ABC transporter ATP-binding protein -
  JM964_RS09590 (JM964_09590) rcrR 1998395..1998844 (-) 450 WP_024414076.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  JM964_RS09595 (JM964_09595) - 1999067..2000083 (+) 1017 WP_044679285.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  JM964_RS09600 (JM964_09600) galU 2000128..2001027 (+) 900 WP_004298345.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  JM964_RS09605 (JM964_09605) - 2001045..2001722 (-) 678 WP_044762436.1 rhomboid family intramembrane serine protease -
  JM964_RS09610 (JM964_09610) - 2001706..2002248 (-) 543 WP_044762437.1 5-formyltetrahydrofolate cyclo-ligase -
  JM964_RS09615 (JM964_09615) - 2002289..2003416 (-) 1128 WP_202847574.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17567.07 Da        Isoelectric Point: 7.5183

>NTDB_id=460923 JM964_RS09590 WP_024414076.1 1998395..1998844(-) (rcrR) [Streptococcus suis strain ID33329]
MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSDLETFVKDIEAELKISKSVASNLVKRMEKNDFIQ
VLPSQFDRRYKQLVLTEKGRSKICHLKSFHEEMHHSLFRGIQKEEFDLVRQVADQLKENIKRYKETNHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=460923 JM964_RS09590 WP_024414076.1 1998395..1998844(-) (rcrR) [Streptococcus suis strain ID33329]
ATGGGACATACTATTGCAGATTTTCGGAATTTACTCAATCAAATTGAACAAATTAGTGAAACGATTGCCAAGGAATATGA
TGTGGAGCACCTAGCTGGACCACAGGGGTGGGCTTTGCGTTTCATAGCAGAACGGTCAGACCTTGAAACCTTTGTCAAAG
ATATTGAAGCGGAGTTGAAAATTTCCAAATCCGTTGCCAGCAATCTGGTTAAGCGAATGGAGAAAAATGACTTTATTCAG
GTTTTGCCATCTCAGTTTGATAGACGTTACAAGCAGTTGGTCTTGACAGAGAAAGGTCGGAGCAAGATTTGTCACCTAAA
ATCCTTCCATGAGGAGATGCACCATTCTCTTTTTAGAGGTATTCAAAAGGAAGAATTTGATTTGGTTAGACAAGTAGCCG
ATCAATTAAAAGAAAATATTAAACGTTATAAGGAGACGAATCATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.662

95.302

0.416