Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   JM964_RS08400 Genome accession   NZ_CP068708
Coordinates   1710286..1713111 (-) Length   941 a.a.
NCBI ID   WP_041179231.1    Uniprot ID   -
Organism   Streptococcus suis strain ID33329     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1705286..1718111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM964_RS08380 (JM964_08380) - 1705579..1705926 (-) 348 WP_014638582.1 hypothetical protein -
  JM964_RS08385 (JM964_08385) - 1705939..1707027 (-) 1089 WP_024389236.1 hypothetical protein -
  JM964_RS08390 (JM964_08390) - 1707086..1709944 (-) 2859 WP_014638585.1 G5 domain-containing protein -
  JM964_RS08395 (JM964_08395) - 1710083..1710256 (+) 174 WP_002942417.1 YlcI/YnfO family protein -
  JM964_RS08400 (JM964_08400) uvrA 1710286..1713111 (-) 2826 WP_041179231.1 excinuclease ABC subunit UvrA Machinery gene
  JM964_RS08405 (JM964_08405) - 1713616..1714560 (+) 945 WP_002939248.1 magnesium transporter CorA family protein -
  JM964_RS08410 (JM964_08410) - 1714576..1715232 (+) 657 WP_012027735.1 DUF1129 domain-containing protein -
  JM964_RS08415 (JM964_08415) rpsR 1715604..1715843 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  JM964_RS08420 (JM964_08420) ssbA 1715876..1716370 (-) 495 WP_002942409.1 single-stranded DNA-binding protein Machinery gene
  JM964_RS08425 (JM964_08425) rpsF 1716382..1716672 (-) 291 WP_002942403.1 30S ribosomal protein S6 -
  JM964_RS08430 (JM964_08430) - 1716844..1717833 (-) 990 WP_044670065.1 lipoate--protein ligase -

Sequence

Protein


Download         Length: 941 a.a.        Molecular weight: 103867.99 Da        Isoelectric Point: 6.1798

>NTDB_id=460912 JM964_RS08400 WP_041179231.1 1710286..1713111(-) (uvrA) [Streptococcus suis strain ID33329]
MQENIVIHGARAHNLKNIDVTIPREKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLGNMDKPDVDSIEGL
SPAISIDQKTTSRNPRSTVGTATEINDYLRLLYARVGVPYCINGHGAIAASSVEQIVDEVLELPERQRLQILAPIVRKKK
GQHKTIFEKVQKDGYVRVRVNGDVYDVSEVPELSKSKAHNIEVVVDRIVIKDGIRSRLFDSIEAALRIADGYVIIDTMNE
KELLFSEYYACPVCGFTVPELEPRLFSFNAPFGSCSDCDGLGMKLEVDTDLIVPDASKTLRDGALAPWNPISSNYYPQML
EQAMNHFGVDMDKPFEELTEEEKNLIFNGSDGKEFHFHYENEFGGVRDIDIPFEGLITNINRRYRETNSDYTRTVMKTYM
NELTCGTCHGYRLNDQALSVKVGGEQGLHIGQLSDLSVADHLQVIEHLTLSENEATIATPIVKEIKDRLSFLNNVGLNYL
TLSRAAGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIASLKKMRDLGNTLIVVEHDEDTMREADWLI
DIGPGAGVFGGEIVASGTPAQVAKNKKSITGQYLSGKREIPVPLERRVGNGRFLEVTGAKENNLQDVTVRFPLGKFVAVT
GVSGSGKSTLVNSILKKAIAQKLNRNSDKPGKFKSISGIEHLDRLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAQTNE
AKIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVFVPCEVCHGHRYNSETLEVHYKEKNIAQVLDMTVNDAVEFF
KHIPKIERKLRTIQDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSLYILDEPTTGLHTEDIAQLLKVLARFVD
DGNTVLVIEHNLDVIKTADHIIDMGPEGGVGGGTVVATGTPEEVAENPASFTGQYLKTKLK

Nucleotide


Download         Length: 2826 bp        

>NTDB_id=460912 JM964_RS08400 WP_041179231.1 1710286..1713111(-) (uvrA) [Streptococcus suis strain ID33329]
ATGCAAGAAAATATTGTGATTCATGGGGCGCGTGCCCATAATTTGAAAAATATTGATGTGACCATTCCGCGTGAGAAGTT
GGTGGTGGTGACTGGTTTGTCGGGGTCTGGTAAGTCGAGTTTGGCTTTTGATACTCTGTATGCCGAAGGTCAACGTCGTT
ATGTGGAATCTTTGTCTGCCTATGCTCGTCAGTTCTTGGGCAACATGGACAAGCCAGATGTGGATTCCATAGAGGGTCTC
AGCCCTGCTATTTCCATTGACCAAAAAACGACGTCGCGGAATCCGCGTTCGACAGTCGGGACGGCGACGGAAATCAATGA
CTATCTCCGCCTACTCTATGCTCGGGTCGGGGTACCTTACTGCATCAACGGTCACGGGGCGATTGCGGCTTCTTCGGTGG
AGCAAATTGTCGATGAGGTCTTGGAATTGCCAGAACGCCAGCGTTTGCAGATTCTAGCTCCGATTGTGCGGAAGAAAAAG
GGTCAGCACAAGACCATTTTTGAGAAGGTGCAGAAGGACGGCTATGTTCGGGTACGGGTCAATGGCGATGTCTATGATGT
GTCTGAAGTGCCTGAGTTGTCCAAGAGCAAGGCACATAACATTGAGGTTGTGGTTGATCGGATTGTGATCAAAGATGGTA
TTCGCTCTCGGCTCTTCGATTCCATAGAAGCGGCCCTGCGGATTGCGGACGGCTATGTCATCATCGACACCATGAATGAG
AAGGAACTGCTTTTCTCTGAGTACTATGCCTGCCCAGTTTGTGGCTTTACGGTACCAGAGTTGGAGCCTCGCCTTTTCTC
TTTCAATGCGCCTTTTGGGTCTTGTAGCGATTGTGACGGTTTGGGGATGAAGCTGGAAGTGGATACGGATTTGATTGTCC
CAGATGCCAGCAAGACCTTGCGTGACGGGGCTTTGGCTCCGTGGAATCCCATTTCTTCTAACTACTATCCTCAGATGTTG
GAGCAGGCCATGAATCACTTTGGTGTGGACATGGACAAGCCTTTTGAGGAATTGACGGAAGAGGAGAAGAACCTGATTTT
CAACGGTTCTGACGGGAAAGAATTCCATTTCCATTATGAAAATGAGTTCGGTGGGGTGCGTGATATTGACATTCCATTCG
AGGGCTTGATTACCAACATTAATCGCCGCTATCGTGAAACCAACAGTGACTATACACGGACAGTCATGAAGACTTACATG
AATGAGCTGACCTGTGGGACCTGCCACGGCTATCGCCTCAATGACCAAGCCCTGTCTGTCAAAGTCGGTGGTGAGCAGGG
ACTTCATATCGGGCAGTTGTCTGACTTGTCCGTGGCGGATCATTTGCAAGTCATTGAACATCTGACCTTGTCTGAAAATG
AAGCCACCATTGCAACACCCATTGTCAAGGAAATCAAGGATCGCCTGTCCTTCCTAAATAACGTTGGTCTCAACTATCTG
ACTCTTTCACGAGCAGCAGGTACCCTTTCTGGTGGTGAGAGCCAGCGGATTCGTCTGGCGACTCAGATTGGCTCTAACCT
GTCTGGTGTCCTCTATATTCTGGATGAGCCGTCGATTGGTCTGCACCAGCGGGACAATGACCGTCTGATTGCTAGTCTTA
AGAAAATGCGTGATTTGGGCAATACATTGATTGTGGTGGAGCATGATGAGGACACTATGCGTGAGGCAGATTGGTTAATC
GATATTGGACCTGGTGCGGGTGTGTTTGGCGGAGAAATCGTGGCCTCTGGAACGCCAGCCCAAGTAGCTAAAAATAAAAA
ATCCATTACAGGCCAGTACCTGTCTGGCAAACGTGAAATTCCAGTTCCTTTGGAACGTCGTGTTGGCAATGGTCGATTCC
TGGAGGTAACAGGTGCCAAGGAAAATAACCTGCAAGATGTGACTGTTCGTTTCCCGCTCGGGAAATTTGTGGCGGTGACA
GGGGTGTCTGGCTCAGGCAAATCAACTCTGGTCAATTCCATTCTGAAAAAAGCTATTGCTCAGAAACTCAATCGCAATTC
GGACAAGCCAGGTAAGTTCAAGTCCATTTCAGGAATTGAACACTTGGATCGCCTGATTGATATTGACCAAAGCCCGATTG
GACGGACACCGCGTTCCAACCCAGCTACCTACACAGGTGTTTTTGACGATATTCGTGACCTCTTTGCCCAGACCAATGAA
GCCAAAATCCGTGGCTACAAGAAGGGACGTTTCTCCTTTAACGTCAAAGGTGGACGGTGTGAAGCTTGTTCTGGTGACGG
GATTATCAAGATTGAAATGCATTTCTTGCCAGATGTCTTTGTTCCTTGCGAAGTCTGTCATGGACACCGTTACAATTCTG
AAACCTTGGAAGTACATTACAAGGAGAAAAATATTGCCCAAGTCCTTGATATGACGGTCAATGACGCGGTCGAGTTCTTC
AAACACATTCCGAAAATTGAGCGCAAACTCCGTACCATTCAAGATGTGGGCTTGGGCTACGTTACTCTAGGTCAGCCAGC
AACCACTCTATCAGGTGGGGAAGCTCAACGGATGAAGTTGGCTTCTGAACTCCACAAGCGGTCAACTGGTAAATCCCTCT
ATATCTTGGATGAGCCGACGACTGGCCTGCATACTGAGGACATTGCCCAGTTGCTCAAGGTCTTAGCCCGCTTTGTTGAT
GATGGAAATACCGTGCTGGTCATCGAGCACAATCTGGATGTTATCAAGACAGCCGACCACATTATCGATATGGGACCGGA
AGGCGGTGTCGGCGGTGGTACCGTTGTTGCGACAGGGACACCAGAAGAAGTGGCGGAGAACCCAGCCAGCTTTACAGGTC
AGTATTTGAAAACCAAGTTGAAGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(624-860)

UvrA DNA-binding domain (UvrA_DNA-bind)

(288-396)

UvrA interaction domain (UvrA_inter)

(132-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

89.149

99.894

0.891
  uvrA Streptococcus pneumoniae TIGR4

89.149

99.894

0.891
  uvrA Streptococcus pneumoniae D39

89.149

99.894

0.891