Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   JM964_RS07470 Genome accession   NZ_CP068708
Coordinates   1530674..1531450 (-) Length   258 a.a.
NCBI ID   WP_044674747.1    Uniprot ID   -
Organism   Streptococcus suis strain ID33329     
Function   repressor of recA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1525674..1536450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM964_RS07440 (JM964_07440) - 1525979..1526779 (+) 801 WP_172069188.1 replication-relaxation family protein -
  JM964_RS07445 (JM964_07445) - 1526757..1526924 (+) 168 WP_202847515.1 hypothetical protein -
  JM964_RS07450 (JM964_07450) - 1526985..1528682 (+) 1698 WP_044674748.1 recombinase family protein -
  JM964_RS07455 (JM964_07455) - 1528859..1529590 (-) 732 WP_004194101.1 GntR family transcriptional regulator -
  JM964_RS07460 (JM964_07460) - 1529690..1530007 (-) 318 WP_004194104.1 DUF960 domain-containing protein -
  JM964_RS07465 (JM964_07465) - 1530065..1530598 (-) 534 WP_004194106.1 DUF402 domain-containing protein -
  JM964_RS07470 (JM964_07470) recX 1530674..1531450 (-) 777 WP_044674747.1 recombination regulator RecX Regulator
  JM964_RS07475 (JM964_07475) rlmD 1531488..1532837 (+) 1350 Protein_1448 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  JM964_RS10315 - 1533158..1534630 (-) 1473 WP_228476788.1 plasmid recombination protein -
  JM964_RS07485 (JM964_07485) - 1535871..1535984 (-) 114 Protein_1450 IS3 family transposase -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 30423.04 Da        Isoelectric Point: 9.5101

>NTDB_id=460903 JM964_RS07470 WP_044674747.1 1530674..1531450(-) (recX) [Streptococcus suis strain ID33329]
MRITKIEKKKRLYLLEVDGQDSLYITEDTIVRFMLSKGKEITEQEFRELRDFAQFSYGKNLALYYLSFKQRTKKEVSDYL
KKYEIEENNIVKIVTVLEEEKWLDDGNYVDSYVRQNALNGDKGPAIIRQKLMQKGIPKLLIDKRLAEEDFSELAGKIGEK
LLGRYQRKLPLRALQDKVVQGLMGKGFSYETAKQSLGQLELVADEENEDDLIAKELDKQYRKYRRKYEGYELKQRLIQAL
ARKGYDFDRIQAVLRGYL

Nucleotide


Download         Length: 777 bp        

>NTDB_id=460903 JM964_RS07470 WP_044674747.1 1530674..1531450(-) (recX) [Streptococcus suis strain ID33329]
ATGAGAATTACAAAAATTGAAAAGAAGAAACGTCTTTATTTACTTGAAGTGGATGGTCAGGATAGTTTATATATTACGGA
AGACACAATTGTTCGCTTCATGCTTAGTAAGGGAAAGGAAATCACGGAGCAGGAGTTTCGTGAGCTTCGCGATTTTGCTC
AGTTTTCTTACGGGAAAAATCTAGCACTTTATTACCTTTCCTTCAAGCAACGTACCAAAAAAGAAGTTAGTGATTATCTA
AAAAAATATGAAATTGAAGAAAACAATATTGTTAAGATTGTGACGGTATTAGAAGAGGAAAAATGGCTGGACGATGGGAA
TTATGTTGATAGCTATGTTCGTCAAAATGCTCTAAATGGAGATAAGGGACCAGCTATTATTCGTCAGAAGTTGATGCAGA
AAGGAATTCCTAAACTGCTGATTGATAAAAGGCTGGCAGAGGAAGATTTTTCAGAGCTTGCTGGGAAGATTGGGGAGAAA
TTGTTGGGTAGATACCAAAGAAAATTGCCTCTTCGAGCTTTGCAAGATAAAGTTGTACAGGGATTGATGGGTAAGGGGTT
TTCTTATGAGACGGCCAAACAAAGCCTGGGTCAGTTGGAACTTGTGGCTGATGAGGAAAATGAAGATGACTTAATTGCCA
AGGAACTGGATAAGCAGTATAGAAAATATAGGCGTAAATATGAAGGCTATGAATTGAAGCAAAGGCTGATACAGGCTTTG
GCTCGAAAGGGTTATGACTTTGATCGGATTCAGGCTGTCCTTCGTGGTTATCTGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(80-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Staphylococcus aureus strain ATCC 12600

35.741

100

0.364