Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   JM964_RS07140 Genome accession   NZ_CP068708
Coordinates   1460419..1462080 (-) Length   553 a.a.
NCBI ID   WP_002942943.1    Uniprot ID   -
Organism   Streptococcus suis strain ID33329     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1455419..1467080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM964_RS07115 (JM964_07115) - 1456694..1457161 (-) 468 WP_109371217.1 GNAT family N-acetyltransferase -
  JM964_RS07120 (JM964_07120) - 1457733..1458008 (-) 276 WP_002936247.1 HU family DNA-binding protein -
  JM964_RS07125 (JM964_07125) - 1458098..1458694 (-) 597 WP_044674164.1 YpmS family protein -
  JM964_RS07130 (JM964_07130) - 1458666..1459499 (-) 834 WP_002936251.1 SGNH/GDSL hydrolase family protein -
  JM964_RS07135 (JM964_07135) - 1459492..1460325 (-) 834 WP_202847507.1 DegV family protein -
  JM964_RS07140 (JM964_07140) recN 1460419..1462080 (-) 1662 WP_002942943.1 DNA repair protein RecN Machinery gene
  JM964_RS07145 (JM964_07145) - 1462083..1462508 (-) 426 WP_002936261.1 arginine repressor -
  JM964_RS07150 (JM964_07150) - 1462501..1463322 (-) 822 WP_014638452.1 TlyA family RNA methyltransferase -
  JM964_RS07155 (JM964_07155) - 1463315..1464184 (-) 870 WP_044674156.1 polyprenyl synthetase family protein -
  JM964_RS07160 (JM964_07160) - 1464184..1464399 (-) 216 WP_002936269.1 exodeoxyribonuclease VII small subunit -
  JM964_RS07165 (JM964_07165) xseA 1464374..1465717 (-) 1344 WP_044674153.1 exodeoxyribonuclease VII large subunit -
  JM964_RS07170 (JM964_07170) - 1465884..1466792 (+) 909 WP_024413789.1 neutral zinc metallopeptidase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62729.91 Da        Isoelectric Point: 4.6542

>NTDB_id=460900 JM964_RS07140 WP_002942943.1 1460419..1462080(-) (recN) [Streptococcus suis strain ID33329]
MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGARATTDVIRHGAAKAEIEGLFSFENSRALEQIL
LEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDEFWSLKDR
YQTTFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDKLLNHKQIADTLTNAYALLDNED
FSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAYYVVEDVTKRLSDVVDNLDFDGNRLLQLESRLDLLNTITKKYGGTV
DDVLDYFSKISEEYNLLTGNDLSGDDLEVQLKNLEKELVERAGQLSQSRHELAVVLEDIIRQELQDLYMEKARFQVRFTK
GKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKEGKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
QYGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=460900 JM964_RS07140 WP_002942943.1 1460419..1462080(-) (recN) [Streptococcus suis strain ID33329]
ATGTTACTAGAAGTGTCCATTAAAAACTTCGCCATTATTGAGCAGGTATCACTGAATTTTGAAAATGGGATGACCATCCT
ATCTGGTGAAACAGGTGCAGGTAAATCCATTATCATTGATGCCATGAACCTGATGCTAGGGGCGCGTGCGACGACAGATG
TTATCAGACATGGGGCCGCCAAGGCTGAGATTGAAGGGCTTTTTTCCTTTGAAAATAGCAGAGCTCTCGAGCAGATTTTG
CTTGAACAGGGGATTGAAGTAGCTGACGAACTCATTATCCGTCGGGAAATCCTGCAAAATGGCCGTTCGGTCAGTCGTGT
CAATGGACAAATGGTCAATTTATCTGTCTTGAAACAGATTGGGCAATATTTAGTAGATATTCATGGTCAACATGACCAGG
AAGAATTGATGAAATCCCAGCACCATATCCGTCTTTTGGACAGTTTCGGAGAAGATGAATTTTGGAGTCTTAAAGACCGT
TATCAGACAACCTTTGATGCCTATCGTAGTCTTCGCAAACGAGTTCTTGAAAAGCAAAAAAATGAGCAAGAACACAAGGC
GCGGATTGAGATGTTGGAATACCAAATTGCTGAGATCGAAGCGGCAGATTTGAAGTCTGGCGAAGATATTCAACTCAATC
AGGAACGAGATAAACTACTCAACCACAAACAAATTGCAGATACACTGACCAATGCCTATGCACTGTTAGACAATGAAGAT
TTTTCAAGCTTGAACAACCTACGCTCAGCTATGAGTGACTTGCAAAGTCTGGAAGAATTTGATCCAGACTACAAACAGCT
CTCTTCTAGCCTGACAGAAGCTTATTATGTTGTTGAAGATGTGACCAAGCGTCTCAGCGATGTGGTCGATAATCTAGATT
TTGACGGCAATCGTCTCTTGCAATTGGAAAGTCGTCTGGATTTGCTCAATACCATTACGAAGAAATATGGTGGAACTGTC
GATGATGTTTTGGACTATTTTAGTAAAATCAGCGAAGAATACAATCTATTGACAGGCAATGATTTATCTGGTGATGATTT
GGAAGTTCAGCTTAAGAACTTAGAGAAAGAATTGGTTGAACGAGCAGGTCAGCTCAGCCAATCACGCCATGAATTGGCTG
TTGTTTTAGAAGATATTATTCGCCAAGAATTGCAAGACTTGTATATGGAAAAAGCTCGTTTCCAAGTTCGATTTACTAAA
GGAAAATTTAATCGAGAAGGAAATGAAACAGTCGAATTTTACATCTCTACCAACCCAGGCGAAGACTTCAAACCACTGGT
TAAGGTAGCTTCTGGAGGAGAATTGTCTCGCTTGATGTTGGCCATTAAGTCAGCCTTTGCCCGTAAAGAAGGTAAAACTT
CTATTGTCTTTGATGAGGTGGATACAGGGGTGTCTGGACGTGTGGCCCAGGCAATTGCCCAGAAAATTTATAAAATCGGA
CAATATGGTCAAGTATTGGCGATTTCTCATCTACCACAAGTCATTGCTATTGCAGATTATCAGTTCTTTATTGAGAAAAT
ATCCGACGAACATTCGACTGTTTCTCGTGTCCGTCTCTTGACCAAAGAAGAGCGTATTGAGGAAATTGCCAAGATGTTAG
CCGGTGACAAAATCACAGATGCAGCCCGTAATCAAGCAAAAGAATTAGTAGAAAAAGGTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.684

100

0.45