Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   JM964_RS02030 Genome accession   NZ_CP068708
Coordinates   399039..399656 (-) Length   205 a.a.
NCBI ID   WP_202847620.1    Uniprot ID   -
Organism   Streptococcus suis strain ID33329     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 394039..404656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM964_RS02010 (JM964_02010) - 394710..395543 (+) 834 WP_014637516.1 energy-coupling factor transporter transmembrane component T family protein -
  JM964_RS02015 (JM964_02015) - 395703..395906 (+) 204 WP_014637517.1 cold-shock protein -
  JM964_RS02020 (JM964_02020) rsmG 396097..396810 (-) 714 WP_014637518.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  JM964_RS02025 (JM964_02025) pbp1a 396869..399058 (-) 2190 WP_014637519.1 penicillin-binding protein PBP1A -
  JM964_RS02030 (JM964_02030) recU 399039..399656 (-) 618 WP_202847620.1 Holliday junction resolvase RecU Machinery gene
  JM964_RS02035 (JM964_02035) - 399722..400261 (+) 540 WP_004194171.1 DUF1273 domain-containing protein -
  JM964_RS02040 (JM964_02040) gpsB 400332..400667 (+) 336 WP_004194167.1 cell division regulator GpsB -
  JM964_RS02050 (JM964_02050) - 401224..402390 (+) 1167 WP_024400110.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  JM964_RS02055 (JM964_02055) - 402400..403854 (+) 1455 WP_202847621.1 cell division site-positioning protein MapZ family protein -
  JM964_RS02060 (JM964_02060) - 404075..404557 (-) 483 WP_004194159.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23835.43 Da        Isoelectric Point: 9.9440

>NTDB_id=460862 JM964_RS02030 WP_202847620.1 399039..399656(-) (recU) [Streptococcus suis strain ID33329]
MVNYPHKVSKKINRTSPISSQRVNFANRGMSFEAAINDSNQYYLAHDIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVFKRHYIDFEAKETRQKTSMPMKNFHAHQIEHMKQVVKQGGICFVLLHFSTLKETYLLPATHLIEFYQVDMG
SKSMPLTFIRQYGFEIQMGRFPSIPYLEIVEKNLLGGESFENYNN

Nucleotide


Download         Length: 618 bp        

>NTDB_id=460862 JM964_RS02030 WP_202847620.1 399039..399656(-) (recU) [Streptococcus suis strain ID33329]
ATGGTCAATTATCCTCATAAGGTGTCAAAAAAAATCAATAGAACCAGTCCTATTTCATCCCAGCGAGTAAACTTTGCTAA
TCGCGGAATGTCTTTTGAGGCCGCTATCAACGATAGCAATCAATATTACCTTGCGCACGATATTGCTGTCATTCACAAGA
AGCCAACTCCCGTGCAAATTGTAAAAGTTGATTACCCCAAACGGAGCCGTGCTAAGATTGTCGAAGCATACTTTCGACAG
GCATCTACCACAGACTACTCTGGTGTTTTTAAAAGACATTATATTGATTTTGAAGCGAAAGAGACACGCCAAAAAACATC
CATGCCCATGAAAAATTTTCATGCGCATCAGATCGAACACATGAAACAGGTTGTTAAACAAGGTGGCATTTGTTTTGTCC
TTCTTCACTTTTCAACATTAAAAGAAACCTATCTCTTGCCAGCCACTCATTTGATCGAATTTTATCAAGTAGACATGGGT
AGTAAGTCGATGCCTCTAACCTTTATTCGACAATACGGCTTTGAGATTCAAATGGGGCGTTTCCCCAGCATCCCATATCT
GGAAATCGTTGAAAAAAATCTATTAGGTGGTGAATCTTTTGAAAACTACAACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

49.246

97.073

0.478