Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   JM964_RS00205 Genome accession   NZ_CP068708
Coordinates   28436..29218 (+) Length   260 a.a.
NCBI ID   WP_002935335.1    Uniprot ID   -
Organism   Streptococcus suis strain ID33329     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23436..34218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM964_RS00185 (JM964_00185) mreD 24284..24772 (+) 489 WP_014637249.1 rod shape-determining protein MreD -
  JM964_RS00190 (JM964_00190) pcsB 24857..26113 (+) 1257 WP_044673339.1 peptidoglycan hydrolase PcsB -
  JM964_RS00195 (JM964_00195) - 26216..27184 (+) 969 WP_002935337.1 ribose-phosphate diphosphokinase -
  JM964_RS00200 (JM964_00200) - 27271..28449 (+) 1179 WP_044673338.1 pyridoxal phosphate-dependent aminotransferase -
  JM964_RS00205 (JM964_00205) recO 28436..29218 (+) 783 WP_002935335.1 DNA repair protein RecO Machinery gene
  JM964_RS00210 (JM964_00210) plsX 29215..30222 (+) 1008 WP_014637253.1 phosphate acyltransferase PlsX -
  JM964_RS00215 (JM964_00215) - 30215..30463 (+) 249 WP_014637254.1 phosphopantetheine-binding protein -
  JM964_RS00220 (JM964_00220) purC 30581..31288 (+) 708 WP_044668643.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30486.97 Da        Isoelectric Point: 5.4193

>NTDB_id=460837 JM964_RS00205 WP_002935335.1 28436..29218(+) (recO) [Streptococcus suis strain ID33329]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSKLVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKN
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEVLTNIFEIQLLGRFGISLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRFFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=460837 JM964_RS00205 WP_002935335.1 28436..29218(+) (recO) [Streptococcus suis strain ID33329]
ATGGAACGAATTGAAACCAGGGGATTAGTCCTATATAATCGGAATTTTCGAGAAGATGATAAGCTGGTCAAGATTTTTAC
AGAGAAGGCTGGCAAGCGAATGTTTTTCGTGAAACATGCCTCTAAATCTAAGCTGGTAGCTTCTATCCAGCCTTTGACCT
ATGCGGATTTTATCGTTAAAATCAATGATGATGGTCTGTCTTATATCGAAGATTTTCATCAGGTACAGCCCTTTAAGAAT
ATTAACGGTGATATTTTCAAGCTTAGCTATGCTACCTATATCTTGGCCCTGGCAGATGCGGCCTTGCAGGACAAGGTCTA
TGACCCAGCTCTCTTTGCTTTTTTGGTCAAGACCTTGGACTTGATGGAGTCAGGTTTGGACTACGAAGTTCTGACCAATA
TCTTTGAAATTCAGCTCTTGGGTCGATTTGGGATCAGTCTGAATTTTCACGAGTGTGCTTTTTGTCATCGGGTTGGTTTG
CCTTTTGACTATTCCTACAAGTACAGCGGTGTCTTGTGTCCGCAACACTATCAACAAGATGAGCGACGGGCTTATCTGGA
TCCCAATGTTCCCTATCTACTTGATCAATTTCAGGCTATTTCCTTTGATGAGCTAGAAACCATTTCCATCAAGCCTGAGA
TGAAGCGAAAATTACGGTTTTTTATTGACCAGCTGTACGAGGAATATGTGGGGATTCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACCGAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

69.721

96.538

0.673