Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV079_RS15900 Genome accession   NZ_CP056850
Coordinates   3281475..3282089 (-) Length   204 a.a.
NCBI ID   WP_181636939.1    Uniprot ID   -
Organism   Citrobacter freundii strain RHBSTW-00120     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3276475..3287089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV079_RS15885 (HV079_15890) helD 3276699..3278753 (-) 2055 WP_181636938.1 DNA helicase IV -
  HV079_RS15890 (HV079_15895) - 3278879..3279325 (+) 447 WP_096757638.1 YccF domain-containing protein -
  HV079_RS15895 (HV079_15900) yccS 3279344..3281497 (+) 2154 WP_096759437.1 YccS family putative transporter -
  HV079_RS15900 (HV079_15905) sxy/tfoX 3281475..3282089 (-) 615 WP_181636939.1 TfoX/Sxy family DNA transformation protein Regulator
  HV079_RS15905 (HV079_15910) sulA 3282306..3282815 (+) 510 WP_096757640.1 SOS-induced cell division inhibitor SulA -
  HV079_RS15910 (HV079_15915) ompA 3283171..3284229 (+) 1059 WP_115259970.1 porin OmpA -
  HV079_RS15915 (HV079_15920) matP 3284328..3284780 (-) 453 WP_096757641.1 macrodomain Ter protein MatP -
  HV079_RS15920 (HV079_15925) - 3284966..3286726 (+) 1761 WP_115258918.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23224.81 Da        Isoelectric Point: 9.1904

>NTDB_id=460823 HV079_RS15900 WP_181636939.1 3281475..3282089(-) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00120]
MKNLSYARIYKSQEYLASLGTISYRSLFGSYSLTVGDTVFAMVADGELYLRACEQSVQYCVKHSPVWLTFMKRGRPVILN
YYQVNDALWRNHPQLVSLSRYSLDAAVKEKQTRVSQHRLRELPNISFHLETLLSEAGINDEGTLRTLGAQMCWLKLLQIN
PSLTVKILYALEGAISGIHEAALPAVRRRELVEWVNSLKPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=460823 HV079_RS15900 WP_181636939.1 3281475..3282089(-) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00120]
ATGAAAAACCTCTCTTATGCCAGGATCTATAAATCACAAGAATATTTGGCCTCTTTAGGTACAATTAGCTACCGCTCTTT
ATTTGGCAGTTATAGCTTGACGGTGGGCGATACGGTCTTTGCAATGGTTGCCGACGGTGAGTTATACCTGCGGGCCTGCG
AGCAAAGCGTACAGTACTGTGTAAAACATTCCCCAGTCTGGTTGACGTTTATGAAGCGGGGACGTCCCGTGATACTCAAC
TATTATCAAGTTAATGATGCGCTGTGGCGAAACCATCCGCAGTTGGTGTCTTTATCACGATATTCGCTGGATGCCGCAGT
AAAAGAAAAACAGACGCGTGTTTCGCAACACCGGTTACGGGAACTGCCGAACATTTCCTTTCATCTGGAGACCCTACTGA
GTGAAGCCGGGATTAACGATGAGGGTACATTACGCACCCTGGGTGCTCAAATGTGTTGGCTAAAGCTTTTGCAAATTAAC
CCATCGCTGACAGTGAAAATTCTTTATGCGCTTGAGGGCGCAATCAGTGGGATACATGAAGCAGCACTCCCGGCGGTTCG
CCGCCGGGAGTTGGTTGAGTGGGTGAATTCACTTAAGCCTGAACCGGGTTACTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.608

100

0.696