Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LILO_RS04215 Genome accession   NC_020450
Coordinates   859742..861409 (+) Length   555 a.a.
NCBI ID   WP_015426161.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis IO-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 854742..866409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LILO_RS04190 (lilo_0791) - 855781..856020 (+) 240 WP_015426156.1 exodeoxyribonuclease VII small subunit -
  LILO_RS04195 (lilo_0792) - 856169..857326 (+) 1158 WP_015426157.1 glycerate kinase -
  LILO_RS04200 (lilo_0793) - 857408..858265 (+) 858 WP_042230207.1 polyprenyl synthetase family protein -
  LILO_RS04205 (lilo_0794) - 858345..859151 (+) 807 WP_015426159.1 TlyA family RNA methyltransferase -
  LILO_RS04210 (lilo_0795) - 859148..859594 (+) 447 WP_015426160.1 arginine repressor -
  LILO_RS04215 (lilo_0796) recN 859742..861409 (+) 1668 WP_015426161.1 DNA repair protein RecN Machinery gene
  LILO_RS04225 (lilo_0798) - 862135..862701 (+) 567 WP_003131353.1 TMEM175 family protein -
  LILO_RS04230 (lilo_0799) - 862799..863320 (+) 522 WP_015426163.1 DUF805 domain-containing protein -
  LILO_RS04235 (lilo_0800) - 863344..864282 (+) 939 WP_015426164.1 DUF805 domain-containing protein -
  LILO_RS04240 (lilo_0801) rsmH 864502..865455 (+) 954 WP_015426165.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  LILO_RS04245 (lilo_0802) - 865613..865993 (+) 381 WP_003131357.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62921.16 Da        Isoelectric Point: 4.6494

>NTDB_id=46080 LILO_RS04215 WP_015426161.1 859742..861409(+) (recN) [Lactococcus lactis subsp. lactis IO-1]
MLQEISIKNFAIIEEIHLSFESGMTILTGETGAGKSIIIDAMSLLLGERASSDFVRHGANKAEIEGLFFFDKTPELKAVL
LELGFEEVDSEIILRREIFANGRSVCRINGQMVNLATLRQVGELLVDIHGQHDSQELMNPKSHLRLLDEFGDEVFDQIKN
NYKLKFENFKNLRQQLNLRQKNEQEFAQRIEILQFQAEEIEAAEINLEEDEQLVNRREKLNNIKNIADSLSSAYLALDDE
DNDYSSLNNIRTTMTELDKISNFDNDYQELADKTAESYYVLEEVANQIQRIMSDLEFNPAELLQIEDRIMTLTTLKKKYG
PELSDVMNYLEKVQLELSELTGSENDSENLENSVKVAQVQLIEASKKLNEARHKIAKEVEKDIKHELSELYMEKADFKVS
FEGAKFSPNGNEHVEFFIQTNPGEGFKPLAKTASGGELSRLMLAIKSSFSRRENKTAIVFDEVDTGVSGRVAQAIANKIY
KIARHGQVLAISHLPQVVAIADRQFYIEKASTNDITTSTVRKLNAEERVNEIAKMLAGEDLTKEALAQAKRLLSK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=46080 LILO_RS04215 WP_015426161.1 859742..861409(+) (recN) [Lactococcus lactis subsp. lactis IO-1]
ATGTTACAAGAGATTTCAATCAAAAATTTTGCAATTATTGAAGAAATTCATCTATCCTTTGAGAGTGGAATGACGATTTT
AACTGGGGAAACTGGTGCGGGAAAATCAATAATTATTGATGCAATGTCTTTATTATTAGGTGAGCGTGCTTCGAGTGATT
TTGTGCGACATGGGGCAAACAAAGCCGAAATAGAAGGTCTCTTTTTCTTTGATAAAACTCCAGAATTGAAGGCGGTATTA
TTAGAACTTGGCTTTGAAGAAGTAGATTCTGAAATTATTTTAAGACGTGAGATTTTTGCTAATGGTCGTTCCGTTTGTCG
AATCAATGGTCAAATGGTTAATTTAGCTACGCTAAGACAAGTGGGTGAATTATTAGTTGATATTCATGGTCAACACGATA
GCCAAGAATTGATGAATCCGAAAAGCCATCTTCGTTTACTTGATGAATTTGGTGACGAAGTCTTTGATCAGATAAAAAAT
AATTACAAACTCAAATTTGAAAACTTCAAAAATTTGCGTCAACAGCTCAATCTACGACAAAAAAATGAGCAAGAATTTGC
TCAAAGAATTGAAATTCTTCAATTTCAGGCTGAAGAAATTGAAGCGGCGGAAATTAATCTTGAAGAAGATGAACAATTAG
TTAATCGCCGAGAAAAGTTAAATAATATTAAAAATATTGCTGATTCGCTTAGTAGTGCTTATCTAGCGCTTGATGATGAA
GATAATGATTATTCAAGTCTTAATAATATCCGAACAACAATGACAGAATTGGATAAAATTAGTAATTTTGATAATGACTA
TCAAGAACTTGCTGACAAGACAGCTGAAAGTTATTATGTATTAGAAGAAGTTGCTAATCAAATTCAAAGAATCATGAGTG
ATTTAGAATTTAATCCAGCTGAGCTTTTACAAATTGAAGACCGGATTATGACCTTGACCACTTTGAAAAAAAAATATGGC
CCAGAACTGTCCGATGTGATGAACTATTTAGAGAAAGTCCAACTCGAACTCTCAGAACTGACGGGTTCAGAAAATGACTC
AGAAAATCTAGAAAATTCAGTTAAAGTTGCACAAGTTCAACTCATTGAAGCAAGTAAAAAACTTAATGAAGCACGCCATA
AAATTGCCAAAGAAGTTGAAAAAGATATTAAACACGAACTTTCTGAGCTTTATATGGAAAAAGCTGATTTCAAAGTTAGT
TTTGAAGGGGCAAAGTTTTCGCCAAACGGGAATGAGCATGTTGAATTCTTTATTCAAACCAATCCGGGAGAAGGATTTAA
ACCGCTGGCAAAAACAGCTTCGGGTGGTGAACTTTCACGTTTAATGCTCGCCATAAAATCAAGCTTTTCAAGACGTGAAA
ATAAAACAGCCATTGTTTTTGATGAGGTCGATACTGGTGTTTCTGGTCGTGTTGCTCAAGCGATTGCTAATAAAATATAT
AAAATTGCTAGGCATGGACAAGTTCTTGCAATTTCTCACCTTCCACAAGTTGTGGCCATTGCCGACAGACAATTTTATAT
TGAAAAAGCTTCAACCAATGACATTACTACTTCCACAGTTAGAAAATTAAACGCTGAAGAAAGAGTAAATGAAATTGCGA
AAATGCTTGCTGGTGAAGATTTAACTAAAGAAGCCTTAGCTCAGGCTAAACGTTTATTGAGCAAATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_23)

(4-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.455

100

0.449

Multiple sequence alignment