Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV083_RS08625 Genome accession   NZ_CP056839
Coordinates   1803195..1803809 (+) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain RHBSTW-00126     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1798195..1808809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV083_RS08605 (HV083_08610) - 1798566..1800326 (-) 1761 WP_003035878.1 Lon protease family protein -
  HV083_RS08610 (HV083_08615) matP 1800512..1800964 (+) 453 WP_003035881.1 macrodomain Ter protein MatP -
  HV083_RS08615 (HV083_08620) ompA 1801053..1802111 (-) 1059 WP_003836839.1 porin OmpA -
  HV083_RS08620 (HV083_08625) sulA 1802469..1802978 (-) 510 WP_032948945.1 SOS-induced cell division inhibitor SulA -
  HV083_RS08625 (HV083_08630) sxy/tfoX 1803195..1803809 (+) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  HV083_RS08630 (HV083_08635) yccS 1803787..1805940 (-) 2154 WP_032941200.1 YccS family putative transporter -
  HV083_RS08635 (HV083_08640) - 1805959..1806405 (-) 447 WP_003035892.1 YccF domain-containing protein -
  HV083_RS08640 (HV083_08645) helD 1806531..1808585 (+) 2055 WP_048219154.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=460792 HV083_RS08625 WP_003035889.1 1803195..1803809(+) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00126]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=460792 HV083_RS08625 WP_003035889.1 1803195..1803809(+) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00126]
ATGAAAGAGCTTTCTTATGCACGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACTGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGAGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAATGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACAATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACACGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686