Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV084_RS08950 Genome accession   NZ_CP056834
Coordinates   1858454..1859068 (+) Length   204 a.a.
NCBI ID   WP_016152483.1    Uniprot ID   R8X084
Organism   Citrobacter sp. RHBSTW-00127     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1853454..1864068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV084_RS08930 (HV084_08945) - 1853815..1855575 (-) 1761 WP_181553851.1 Lon protease family protein -
  HV084_RS08935 (HV084_08950) matP 1855761..1856213 (+) 453 WP_016152480.1 macrodomain Ter protein MatP -
  HV084_RS08940 (HV084_08955) ompA 1856312..1857370 (-) 1059 WP_046275731.1 porin OmpA -
  HV084_RS08945 (HV084_08960) sulA 1857728..1858237 (-) 510 WP_046275730.1 SOS-induced cell division inhibitor SulA -
  HV084_RS08950 (HV084_08965) sxy/tfoX 1858454..1859068 (+) 615 WP_016152483.1 TfoX/Sxy family DNA transformation protein Regulator
  HV084_RS08955 (HV084_08970) yccS 1859046..1861199 (-) 2154 WP_016152484.1 YccS family putative transporter -
  HV084_RS08960 (HV084_08975) - 1861218..1861664 (-) 447 WP_016152485.1 YccF domain-containing protein -
  HV084_RS08965 (HV084_08980) helD 1861790..1863844 (+) 2055 WP_094169069.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.52 Da        Isoelectric Point: 8.6113

>NTDB_id=460769 HV084_RS08950 WP_016152483.1 1858454..1859068(+) (sxy/tfoX) [Citrobacter sp. RHBSTW-00127]
MKEKSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=460769 HV084_RS08950 WP_016152483.1 1858454..1859068(+) (sxy/tfoX) [Citrobacter sp. RHBSTW-00127]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCGGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTAGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGGCGACCAGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAGAACCAGCAGCAGTTAGTATCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATTTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGCTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGAGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8X084

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.154

98.529

0.681