Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV085_RS16635 Genome accession   NZ_CP056830
Coordinates   3387119..3387715 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain RHBSTW-00128     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3382119..3392715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV085_RS16620 (HV085_16615) helD 3382327..3384381 (-) 2055 WP_009485779.1 DNA helicase IV -
  HV085_RS16625 (HV085_16620) - 3384506..3384952 (+) 447 WP_002898425.1 YccF domain-containing protein -
  HV085_RS16630 (HV085_16625) yccS 3384970..3387105 (+) 2136 WP_009485780.1 YccS family putative transporter -
  HV085_RS16635 (HV085_16630) sxy/tfoX 3387119..3387715 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  HV085_RS27105 - 3387893..3388021 (+) 129 WP_254895261.1 hypothetical protein -
  HV085_RS16645 (HV085_16635) sulA 3388064..3388573 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  HV085_RS16650 (HV085_16640) ompA 3388926..3389996 (+) 1071 WP_002898408.1 porin OmpA -
  HV085_RS16655 (HV085_16645) matP 3390128..3390580 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  HV085_RS16660 (HV085_16650) - 3390766..3392523 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=460754 HV085_RS16635 WP_004179217.1 3387119..3387715(-) (sxy/tfoX) [Klebsiella pneumoniae strain RHBSTW-00128]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=460754 HV085_RS16635 WP_004179217.1 3387119..3387715(-) (sxy/tfoX) [Klebsiella pneumoniae strain RHBSTW-00128]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51