Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   JKV48_RS11655 Genome accession   NZ_CP068682
Coordinates   2383760..2384842 (-) Length   360 a.a.
NCBI ID   WP_235103089.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCCP11854     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2378760..2389842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKV48_RS11635 (JKV48_11580) - 2379375..2379473 (-) 99 WP_031844945.1 hypothetical protein -
  JKV48_RS11640 (JKV48_11585) secA 2379515..2382046 (-) 2532 WP_000506541.1 preprotein translocase subunit SecA -
  JKV48_RS11645 (JKV48_11590) hpf 2382460..2383032 (-) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  JKV48_RS11650 (JKV48_11595) - 2383093..2383767 (-) 675 WP_001057968.1 ComF family protein -
  JKV48_RS11655 (JKV48_11600) comFA 2383760..2384842 (-) 1083 WP_235103089.1 DEAD/DEAH box helicase Machinery gene
  JKV48_RS11660 (JKV48_11605) fakB1 2385206..2386072 (-) 867 WP_235103090.1 fatty acid kinase binding subunit FakB1 -
  JKV48_RS11665 (JKV48_11610) - 2386216..2386857 (+) 642 WP_000192947.1 YigZ family protein -
  JKV48_RS11670 (JKV48_11615) - 2387029..2388084 (-) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  JKV48_RS11675 (JKV48_11620) gdpS 2388402..2389472 (+) 1071 WP_000460983.1 GGDEF domain-containing protein GdpS -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42085.69 Da        Isoelectric Point: 9.8309

>NTDB_id=460745 JKV48_RS11655 WP_235103089.1 2383760..2384842(-) (comFA) [Staphylococcus aureus strain NCCP11854]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKHAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINKQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTMTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=460745 JKV48_RS11655 WP_235103089.1 2383760..2384842(-) (comFA) [Staphylococcus aureus strain NCCP11854]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGCTCGCAAAGTTCATCGCAAGCATATTATCATCTCTCATTTGAATT
GTCAGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAACACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTTTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAAACAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTATGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(214-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.643

94.167

0.364