Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LILO_RS02290 Genome accession   NC_020450
Coordinates   464273..464914 (-) Length   213 a.a.
NCBI ID   WP_003131746.1    Uniprot ID   Q9CI22
Organism   Lactococcus lactis subsp. lactis IO-1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 459273..469914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LILO_RS02270 (lilo_0429) cysK 459285..460217 (-) 933 WP_015425894.1 cysteine synthase A -
  LILO_RS02275 (lilo_0430) - 460435..461520 (+) 1086 WP_015425895.1 LysM peptidoglycan-binding domain-containing protein -
  LILO_RS02280 (lilo_0431) - 461560..462192 (-) 633 WP_015425896.1 MBL fold metallo-hydrolase -
  LILO_RS02285 (lilo_0432) - 462193..464205 (-) 2013 WP_042230694.1 transglycosylase domain-containing protein -
  LILO_RS02290 (lilo_0433) recU 464273..464914 (-) 642 WP_003131746.1 Holliday junction resolvase RecU Machinery gene
  LILO_RS02295 (lilo_0434) - 464995..465519 (+) 525 WP_010905434.1 DUF1273 domain-containing protein -
  LILO_RS02300 (lilo_0435) spx 465679..466065 (+) 387 WP_010905435.1 transcriptional regulator Spx -
  LILO_RS02305 (lilo_0436) - 466157..466438 (+) 282 WP_003131743.1 UPF0223 family protein -
  LILO_RS02310 (lilo_0437) - 466404..467183 (+) 780 WP_042230098.1 inositol monophosphatase family protein -
  LILO_RS02315 (lilo_0438) murA 467277..468557 (+) 1281 WP_042230696.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LILO_RS02320 (lilo_0439) - 468557..468748 (+) 192 WP_015425900.1 DNA-directed RNA polymerase subunit beta -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24369.13 Da        Isoelectric Point: 10.1344

>NTDB_id=46072 LILO_RS02290 WP_003131746.1 464273..464914(-) (recU) [Lactococcus lactis subsp. lactis IO-1]
MVNYPNGRSRAYSTVPKKKKSLTELSVTKKSTSKTKGMVAFGKRGMNFEAEINATNEYYLSRGLAVIHKKPTPIQIVKVD
YPQRSRAKITEAYFRQASTTDYSGVYKGHYIDFEAKETQQKTVFPLKNFHEHQIVHMSNVLAQGGIAFVLLHFARLNETY
LLPSSCLITFYYEKGGLKSIPLSHIRENGYKIETNHIPRIPYLEIVNKLCEVQ

Nucleotide


Download         Length: 642 bp        

>NTDB_id=46072 LILO_RS02290 WP_003131746.1 464273..464914(-) (recU) [Lactococcus lactis subsp. lactis IO-1]
ATGGTTAATTATCCTAATGGAAGGTCGCGAGCTTACAGCACTGTTCCTAAGAAAAAAAAATCACTGACAGAGCTGTCAGT
AACTAAAAAAAGCACCTCAAAAACCAAAGGGATGGTTGCCTTCGGGAAGCGGGGAATGAATTTTGAAGCTGAAATTAATG
CAACAAATGAGTATTATCTTTCTCGTGGACTTGCAGTTATTCACAAAAAGCCAACACCAATTCAAATCGTTAAAGTAGAT
TATCCACAAAGGAGTCGTGCAAAAATTACAGAAGCTTACTTCAGGCAAGCATCTACTACTGACTACTCTGGAGTCTATAA
AGGTCACTACATCGACTTTGAAGCAAAAGAAACACAGCAAAAAACTGTTTTCCCTCTAAAAAATTTCCATGAGCATCAAA
TTGTTCACATGAGTAATGTTCTCGCTCAAGGGGGAATTGCTTTTGTCCTCTTGCACTTTGCAAGGCTAAATGAAACATAT
CTTCTTCCATCTTCGTGTTTGATTACTTTTTATTACGAAAAAGGCGGTTTAAAGTCAATTCCGCTTTCTCATATTCGCGA
AAATGGCTATAAAATTGAAACGAATCACATTCCTAGAATTCCTTATTTAGAAATTGTGAATAAACTTTGTGAGGTACAGT
AA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(44-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CI22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

47.393

99.061

0.469

Multiple sequence alignment