Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   LILO_RS02065 Genome accession   NC_020450
Coordinates   421607..422323 (-) Length   238 a.a.
NCBI ID   WP_015425864.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis IO-1     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 416607..427323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LILO_RS02050 (lilo_0388) cdaA 418301..419179 (+) 879 WP_003131542.1 diadenylate cyclase CdaA -
  LILO_RS02055 (lilo_0389) - 419169..420128 (+) 960 WP_015425863.1 YbbR-like domain-containing protein -
  LILO_RS02060 (lilo_0390) glmM 420174..421532 (+) 1359 WP_003131539.1 phosphoglucosamine mutase -
  LILO_RS02065 (lilo_0391) treR 421607..422323 (-) 717 WP_015425864.1 trehalose operon repressor Regulator
  LILO_RS02070 (lilo_0392) - 422434..422919 (+) 486 WP_015425865.1 PTS glucose transporter subunit IIA -
  LILO_RS02075 (lilo_0393) - 423056..424621 (+) 1566 WP_017864142.1 PTS transporter subunit EIIC -
  LILO_RS02080 (lilo_0394) - 424689..426998 (+) 2310 WP_015425867.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27878.60 Da        Isoelectric Point: 6.4168

>NTDB_id=46070 LILO_RS02065 WP_015425864.1 421607..422323(-) (treR) [Lactococcus lactis subsp. lactis IO-1]
MKKYEVILQDLEKKIFNDIYKTNDILPSENELSVSYESSRSTVRQALKILEEKGLIQRRHGYGSIVLAHDRLLFPISGLT
SYKELQTSMGFHSETEVIRFERLEINPKLSETTGFAVGEHAISILRRRKVDGKFSILDWDLFLEKYSEGLTPEHAKISTY
DYLEDILGLDIAYAQKEVTIDFACEDDFKYLDLNPKDHHVVSVKSHVYLADNTLFQYTESRHQVDRFRFTEFARRQKR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=46070 LILO_RS02065 WP_015425864.1 421607..422323(-) (treR) [Lactococcus lactis subsp. lactis IO-1]
ATGAAGAAATATGAAGTGATTTTGCAAGATTTAGAAAAAAAGATTTTTAACGATATCTATAAAACGAACGATATTCTTCC
GAGTGAAAATGAGCTCTCTGTTAGTTACGAGAGCAGTCGTTCAACAGTCAGACAGGCTTTAAAAATTTTAGAAGAGAAAG
GGCTTATTCAAAGACGACATGGCTATGGTAGCATTGTCCTCGCTCATGATAGGCTCCTTTTCCCTATCTCTGGCTTAACT
TCATACAAAGAACTACAAACCTCTATGGGTTTCCATAGTGAAACTGAGGTCATTCGTTTTGAAAGACTTGAAATTAACCC
TAAACTGTCAGAAACAACTGGTTTTGCCGTTGGGGAACACGCCATAAGTATTCTCAGAAGGCGCAAAGTAGATGGCAAAT
TTTCAATTTTAGATTGGGATTTATTTTTAGAAAAATATTCCGAAGGTTTAACTCCAGAACATGCTAAAATTTCAACCTAT
GACTACTTAGAAGATATTCTAGGGCTTGACATTGCCTATGCTCAAAAGGAAGTCACGATTGATTTTGCCTGCGAAGATGA
CTTTAAATATCTTGACTTAAATCCCAAAGACCATCATGTCGTGTCTGTCAAATCCCATGTTTATCTTGCTGATAATACTC
TTTTTCAGTATACTGAATCTCGACATCAAGTCGACCGCTTTCGTTTCACAGAATTCGCTAGACGACAAAAAAGATAA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(89-228)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

46.414

99.58

0.462

Multiple sequence alignment