Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV103_RS15560 Genome accession   NZ_CP056809
Coordinates   3215974..3216588 (-) Length   204 a.a.
NCBI ID   WP_046671316.1    Uniprot ID   A0A212I3H2
Organism   Citrobacter freundii strain RHBSTW-00162     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3210974..3221588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV103_RS15545 (HV103_15545) helD 3211198..3213252 (-) 2055 WP_046671317.1 DNA helicase IV -
  HV103_RS15550 (HV103_15550) - 3213378..3213824 (+) 447 WP_003035892.1 YccF domain-containing protein -
  HV103_RS15555 (HV103_15555) yccS 3213843..3215996 (+) 2154 WP_032939270.1 YccS family putative transporter -
  HV103_RS15560 (HV103_15560) sxy/tfoX 3215974..3216588 (-) 615 WP_046671316.1 TfoX/Sxy family DNA transformation protein Regulator
  HV103_RS15565 (HV103_15565) sulA 3216805..3217314 (+) 510 WP_032936288.1 SOS-induced cell division inhibitor SulA -
  HV103_RS15570 (HV103_15570) ompA 3217672..3218718 (+) 1047 WP_003035883.1 porin OmpA -
  HV103_RS15575 (HV103_15575) matP 3218808..3219260 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  HV103_RS15580 (HV103_15580) - 3219446..3221206 (+) 1761 WP_003035878.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23225.68 Da        Isoelectric Point: 9.1901

>NTDB_id=460685 HV103_RS15560 WP_046671316.1 3215974..3216588(-) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00162]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLKTLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=460685 HV103_RS15560 WP_046671316.1 3215974..3216588(-) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00162]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGAGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGAAGACTCTGCTGA
ATGAAGTTGGCATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A212I3H2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.137

100

0.681