Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   JKV47_RS10670 Genome accession   NZ_CP068680
Coordinates   2209037..2209552 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain NCCP12480     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2204037..2214552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKV47_RS10625 (JKV47_10540) csrA 2204624..2204809 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  JKV47_RS10655 (JKV47_10570) yqaB 2206267..2206833 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  JKV47_RS10660 (JKV47_10575) yqaA 2206830..2207258 (+) 429 WP_001287454.1 YqaA family protein -
  JKV47_RS10665 (JKV47_10580) gshA 2207331..2208887 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  JKV47_RS10670 (JKV47_10585) luxS 2209037..2209552 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  JKV47_RS10675 (JKV47_10590) emrB 2209616..2211154 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  JKV47_RS10680 (JKV47_10595) emrA 2211171..2212343 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  JKV47_RS10685 (JKV47_10600) emrR 2212470..2213000 (-) 531 WP_000378434.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  JKV47_RS10690 (JKV47_10605) ygaH 2213091..2213426 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  JKV47_RS10695 (JKV47_10610) ygaZ 2213416..2214153 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=460632 JKV47_RS10670 WP_001130211.1 2209037..2209552(+) (luxS) [Escherichia coli strain NCCP12480]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=460632 JKV47_RS10670 WP_001130211.1 2209037..2209552(+) (luxS) [Escherichia coli strain NCCP12480]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731