Detailed information NTG0460629

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JKV47_RS10395
• Genome accession: NZ_CP068680
• Coordinates: 2156217..2157209 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain NCCP12480
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2151217..2162209

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JKV47_RS10365 (JKV47_10280)	ispD	2151278..2151988 (+)	711	WP_000246144.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JKV47_RS10370 (JKV47_10285)	ispF	2151988..2152467 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JKV47_RS10375 (JKV47_10290)	truD	2152464..2153513 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
JKV47_RS10380 (JKV47_10295)	surE	2153494..2154255 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
JKV47_RS10385 (JKV47_10300)	pcm	2154249..2154875 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
JKV47_RS10390 (JKV47_10305)	nlpD	2155060..2156154 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
JKV47_RS10395 (JKV47_10310)	rpoS	2156217..2157209 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JKV47_RS10400 (JKV47_10315)	ygbN	2157303..2158667 (-)	1365	WP_000104459.1	GntP family transporter	-
JKV47_RS10405 (JKV47_10320)	ygbM	2158756..2159532 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
JKV47_RS10410 (JKV47_10325)	ygbL	2159537..2160175 (-)	639	WP_001278994.1	aldolase	-
JKV47_RS10415 (JKV47_10330)	otnK	2160172..2161434 (-)	1263	WP_000590386.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=460629 JKV47_RS10395 WP_000081550.1 2156217..2157209(+) (rpoS) [Escherichia coli strain NCCP12480]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=460629 JKV47_RS10395 WP_000081550.1 2156217..2157209(+) (rpoS) [Escherichia coli strain NCCP12480]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715