Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HWQ17_RS04905 Genome accession   NZ_CP056779
Coordinates   1009265..1009891 (-) Length   208 a.a.
NCBI ID   WP_148420982.1    Uniprot ID   -
Organism   Enterobacter pasteurii strain D41-sc-1712200     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1004265..1014891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWQ17_RS04890 (HWQ17_04890) helD 1004503..1006557 (-) 2055 WP_148420976.1 DNA helicase IV -
  HWQ17_RS04895 (HWQ17_04895) - 1006680..1007126 (+) 447 WP_148420978.1 YccF domain-containing protein -
  HWQ17_RS04900 (HWQ17_04900) yccS 1007146..1009308 (+) 2163 WP_148420980.1 YccS family putative transporter -
  HWQ17_RS04905 (HWQ17_04905) sxy/tfoX 1009265..1009891 (-) 627 WP_148420982.1 TfoX/Sxy family DNA transformation protein Regulator
  HWQ17_RS04910 (HWQ17_04910) sulA 1010109..1010618 (+) 510 WP_148420984.1 SOS-induced cell division inhibitor SulA -
  HWQ17_RS04915 (HWQ17_04915) ompA 1010975..1012027 (+) 1053 WP_148420986.1 porin OmpA -
  HWQ17_RS04920 (HWQ17_04920) matP 1012093..1012545 (-) 453 WP_006809347.1 macrodomain Ter protein MatP -
  HWQ17_RS04925 (HWQ17_04925) - 1012732..1014492 (+) 1761 WP_148420988.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24072.62 Da        Isoelectric Point: 9.4675

>NTDB_id=460595 HWQ17_RS04905 WP_148420982.1 1009265..1009891(-) (sxy/tfoX) [Enterobacter pasteurii strain D41-sc-1712200]
MKKISYERIYQSQEYLSPLGEIRHRALFGGYTLAVDEAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQDREKLLQLSSFALDAARRERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGSKTSWLKMRSKN
KGLSIRVLFALEGAIEGLHEAALPADIRRELTEWFNALPESQGHRSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=460595 HWQ17_RS04905 WP_148420982.1 1009265..1009891(-) (sxy/tfoX) [Enterobacter pasteurii strain D41-sc-1712200]
ATGAAAAAGATATCTTATGAACGGATTTATCAATCCCAGGAATACCTCTCTCCGCTGGGTGAAATTCGTCATCGTGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTATTTGCCATGGTGTCTGACGGCGAACTCTACCTTCGCGCCTGTG
AGGAGAGTGCAAAATACTGTGTAAAAAACGCCTCTTCTTTTCTGACGTTAATGAAACGCGGACGTCCGGTTTTGCTTAAT
TACTACCGCGTGGATGAAGGACTGTGGCAAGACAGGGAAAAACTGCTTCAGCTCTCCTCTTTTGCGCTTGATGCCGCCAG
GAGAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTGAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACTAATGAAGAGACGCTACGGCAGCTGGGGTCTAAGACAAGCTGGCTGAAAATGCGCTCTAAAAAT
AAGGGGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGTGCTATAGAGGGATTGCATGAGGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTACGGAGTGGTTTAATGCGCTGCCCGAGTCGCAGGGGCATCGTTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

56.931

97.115

0.553