Detailed information NTG0460580

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JKV45_RS31500
• Genome accession: NZ_CP068678
• Coordinates: 6699607..6700611 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain NCCP15783
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 6694607..6705611

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JKV45_RS31485 (JKV45_31505)	-	6695091..6696098 (+)	1008	WP_003117491.1	TolB family protein	-
JKV45_RS31490 (JKV45_31510)	mutS	6696224..6698791 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
JKV45_RS31495 (JKV45_31515)	fdxA	6698858..6699181 (+)	324	WP_003119354.1	ferredoxin FdxA	-
JKV45_RS31500 (JKV45_31520)	rpoS	6699607..6700611 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
JKV45_RS31505 (JKV45_31525)	-	6700716..6701609 (-)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
JKV45_RS31510 (JKV45_31530)	-	6701655..6702290 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
JKV45_RS31515 (JKV45_31535)	surE	6702323..6703072 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
JKV45_RS31520 (JKV45_31540)	truD	6703060..6704127 (-)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
JKV45_RS31525 (JKV45_31545)	ispF	6704124..6704597 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JKV45_RS31530 (JKV45_31550)	fghA	6704668..6705519 (-)	852	WP_009876912.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=460580 JKV45_RS31500 WP_003113871.1 6699607..6700611(-) (rpoS) [Pseudomonas aeruginosa strain NCCP15783]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=460580 JKV45_RS31500 WP_003113871.1 6699607..6700611(-) (rpoS) [Pseudomonas aeruginosa strain NCCP15783]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653