Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   LILO_RS00330 Genome accession   NC_020450
Coordinates   65138..65923 (-) Length   261 a.a.
NCBI ID   WP_042229977.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis IO-1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 60138..70923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LILO_RS00305 (lilo_0052) - 60738..61907 (+) 1170 WP_015425630.1 ring-cleaving dioxygenase -
  LILO_RS00310 (lilo_0053) - 61918..62508 (+) 591 WP_003132255.1 flavin reductase family protein -
  LILO_RS00315 (lilo_0054) rpmG 62588..62737 (-) 150 WP_003132258.1 50S ribosomal protein L33 -
  LILO_RS00320 (lilo_0055) rpmF 62767..62940 (-) 174 WP_010905107.1 50S ribosomal protein L32 -
  LILO_RS00325 (lilo_0056) - 63304..65085 (+) 1782 WP_015425631.1 heavy metal translocating P-type ATPase -
  LILO_RS00330 (lilo_0057) spo0J 65138..65923 (-) 786 WP_042229977.1 ParB/RepB/Spo0J family partition protein Regulator
  LILO_RS00335 (lilo_0058) rarA 65978..67237 (-) 1260 WP_010905110.1 replication-associated recombination protein A Machinery gene
  LILO_RS00340 (lilo_0059) - 67281..67769 (-) 489 WP_015425633.1 GNAT family N-acetyltransferase -
  LILO_RS00345 (lilo_0060) - 67921..68388 (+) 468 WP_015425634.1 DUF3013 family protein -
  LILO_RS00350 (lilo_0061) - 68418..69971 (+) 1554 WP_015425635.1 ABC-F family ATP-binding cassette domain-containing protein -
  LILO_RS00355 (lilo_0062) - 70102..70386 (+) 285 WP_010905114.1 hypothetical protein -
  LILO_RS00360 (lilo_0063) - 70424..70912 (+) 489 WP_015425636.1 YdeI/OmpD-associated family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29803.67 Da        Isoelectric Point: 9.5731

>NTDB_id=46056 LILO_RS00330 WP_042229977.1 65138..65923(-) (spo0J) [Lactococcus lactis subsp. lactis IO-1]
MVEQITQLKLSTIVKNPYQPRLVFDEDKLKELANSIQENGVLQPIIVRKSKLVGYELLAGERRFQASKLAGLETIPAIIR
SYSDEEMMTLSILENLQRENLNPLEESKSLAQLADKLGMTHDQIAKALGKSRSYVSNLIRLLGLPDTILKHVENREISPA
HARTLLAEKNPKKQLELVDKIIKEQLNVRALEAIIYGEEKFTDKSVSKLNINLFTDETEKELMKKLGNRVKIQANKKYQG
NLSIHFDNLDELEHLIKLLKK

Nucleotide


Download         Length: 786 bp        

>NTDB_id=46056 LILO_RS00330 WP_042229977.1 65138..65923(-) (spo0J) [Lactococcus lactis subsp. lactis IO-1]
ATGGTAGAACAAATCACTCAACTTAAGTTGTCAACAATTGTAAAAAACCCTTACCAGCCTCGTCTTGTTTTTGATGAGGA
TAAATTAAAAGAATTGGCTAATTCTATCCAAGAAAATGGCGTTTTACAACCCATAATCGTTCGTAAATCAAAACTTGTTG
GCTATGAGCTTTTAGCAGGTGAACGTCGGTTTCAAGCTTCAAAATTAGCTGGTTTAGAAACTATACCAGCAATTATTAGA
AGCTATTCTGATGAAGAAATGATGACTCTCTCAATTTTAGAAAATTTGCAGAGAGAAAATCTCAATCCACTAGAAGAGTC
CAAAAGCTTGGCACAACTGGCTGACAAATTGGGAATGACCCACGATCAAATCGCTAAGGCCCTTGGAAAATCAAGGTCTT
ATGTCTCTAATCTTATTCGTTTACTTGGTTTGCCTGACACAATTTTGAAGCATGTTGAAAATCGAGAGATTTCACCTGCT
CACGCTAGAACACTTTTAGCTGAAAAAAATCCTAAAAAGCAATTAGAGCTCGTTGATAAAATAATTAAAGAGCAGCTCAA
TGTCAGAGCACTTGAAGCTATTATTTATGGTGAAGAAAAATTTACTGACAAATCTGTCAGTAAATTAAATATCAATCTTT
TTACTGACGAAACTGAAAAAGAACTGATGAAAAAATTGGGAAATAGGGTTAAGATTCAAGCAAATAAAAAATATCAAGGG
AATTTATCCATTCACTTTGATAATCTTGATGAACTAGAACATCTAATAAAATTACTAAAAAAATAA

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-95)

HTH domain found in ParB protein (HTH_ParB)

(147-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

48.047

98.084

0.471

Multiple sequence alignment