Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LILO_RS00205 Genome accession   NC_020450
Coordinates   38396..39151 (+) Length   251 a.a.
NCBI ID   WP_015425615.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis IO-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 33396..44151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LILO_RS12155 - 33455..33568 (+) 114 WP_225513349.1 acetyltransferase -
  LILO_RS12160 - 33620..33919 (+) 300 Protein_27 GNAT family N-acetyltransferase -
  LILO_RS00180 (lilo_0027) - 33980..34222 (+) 243 WP_015425612.1 TM2 domain-containing protein -
  LILO_RS00185 (lilo_0028) - 34303..35925 (-) 1623 WP_015425613.1 SulP family inorganic anion transporter -
  LILO_RS00190 (lilo_0029) - 36135..36656 (+) 522 WP_003132215.1 GNAT family N-acetyltransferase -
  LILO_RS00200 (lilo_0030) - 37122..38297 (+) 1176 WP_042229974.1 pyridoxal phosphate-dependent aminotransferase -
  LILO_RS00205 (lilo_0031) recO 38396..39151 (+) 756 WP_015425615.1 DNA repair protein RecO Machinery gene
  LILO_RS11820 - 39265..39438 (+) 174 WP_225513350.1 helix-turn-helix domain-containing protein -
  LILO_RS00210 (lilo_0033) lpdA 39509..40927 (-) 1419 WP_010905074.1 dihydrolipoyl dehydrogenase -
  LILO_RS00215 (lilo_0034) - 41121..42725 (-) 1605 WP_015425617.1 2-oxo acid dehydrogenase subunit E2 -
  LILO_RS00220 (lilo_0035) - 42718..43698 (-) 981 WP_015425618.1 alpha-ketoacid dehydrogenase subunit beta -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28716.89 Da        Isoelectric Point: 5.9537

>NTDB_id=46055 LILO_RS00205 WP_015425615.1 38396..39151(+) (recO) [Lactococcus lactis subsp. lactis IO-1]
MRDAETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDGGFSFIEDVSEVVVYKN
ISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQGFDMEVVTNIFELQVLHRFGISLNFSECAFCHKNVG
PFDFSYKFSGCLCPQHFDEDLRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDEYVGIHLKSKKFL
DGMSGWADIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=46055 LILO_RS00205 WP_015425615.1 38396..39151(+) (recO) [Lactococcus lactis subsp. lactis IO-1]
ATGCGTGATGCCGAAACTCAAGGTCTAGTGCTTTACAGTCGTAATTACAAAGAAAAAGATAAATTGGTCAAGATTTTTAC
AGAGTCTTTTGGTAAACGGATGTTTTTTGTCAAAAATTTTGGAAAATCCCCTTATGCTAGTTCCTTACAAGCTTTTACTG
ATGGAAAATTGACGGCAACGATTAATGACGGGGGATTTTCTTTTATCGAGGATGTCAGTGAAGTGGTCGTTTATAAAAAT
ATTAGTTCAGATATTTTCATCAATGCTCATGCTTCTTATATCATAAGTTTGGCTGATGCGGCCATTTCTGATAATCAATA
CGACCCAGGGCTTTATGGATTTCTAAAGCGAAGTTTAGAGCTTTTAGATCAAGGATTTGATATGGAAGTCGTGACTAACA
TTTTTGAATTACAAGTTCTTCATCGTTTTGGGATTTCTTTGAACTTCTCAGAATGTGCATTTTGTCATAAAAACGTTGGC
CCCTTTGATTTTTCTTATAAATTTAGTGGCTGCCTTTGTCCCCAACATTTTGATGAAGATTTACGACGAAGTCATCTTGA
CCCAAATGTGATTTATTTGGTCAATCTTTTTCAAGAAATATCTTTAGATGAACTCAAAAAAATCTCGATAAAAGCAGATA
TGAAACTAAAAATTCGTCAATTTATTGATGGGCTTTACGATGAATATGTCGGAATTCATCTCAAATCCAAAAAATTCTTG
GACGGAATGTCTGGTTGGGCAGATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

54.472

98.008

0.534

Multiple sequence alignment