Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   LILO_RS00025 Genome accession   NC_020450
Coordinates   6065..9676 (+) Length   1203 a.a.
NCBI ID   WP_015425595.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis IO-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1065..14676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LILO_RS00015 (lilo_0002) dnaN 1525..2667 (+) 1143 WP_003130856.1 DNA polymerase III subunit beta -
  LILO_RS00020 (lilo_0003) rexB 2773..6072 (+) 3300 WP_015425594.1 ATP-dependent nuclease subunit B -
  LILO_RS00025 (lilo_0004) rexA 6065..9676 (+) 3612 WP_015425595.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  LILO_RS00030 (lilo_0005) - 9713..9913 (+) 201 WP_003132155.1 DUF951 domain-containing protein -
  LILO_RS00035 (lilo_0006) - 9923..10480 (-) 558 WP_015425596.1 helix-turn-helix domain-containing protein -
  LILO_RS00040 (lilo_0007) ychF 10762..11877 (+) 1116 WP_015425597.1 redox-regulated ATPase YchF -
  LILO_RS00045 (lilo_0008) - 11989..12312 (+) 324 WP_015425598.1 helix-turn-helix domain-containing protein -
  LILO_RS12310 - 12679..12768 (+) 90 Protein_8 hypothetical protein -
  LILO_RS00050 - 12766..13065 (+) 300 WP_042229970.1 hypothetical protein -
  LILO_RS00055 (lilo_0009) - 13052..14026 (+) 975 WP_015425599.1 hypothetical protein -

Sequence

Protein


Download         Length: 1203 a.a.        Molecular weight: 138753.70 Da        Isoelectric Point: 4.8862

>NTDB_id=46054 LILO_RS00025 WP_015425595.1 6065..9676(+) (rexA) [Lactococcus lactis subsp. lactis IO-1]
MSEVKLTPEQNEAIHSSGKNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKKAASELRMRLERDLKKARQES
SDENQARRLTLALHNLSNADIGTMDSFTQKLTKTNFNRVNIDPNFRILADQTESDLIRQEVFEQLVESYLSGDEGLNISK
EKFEELIKNFSKDRNIAGFQKVVYTTYRFASATENPIKWLENQFLKGFETYKSLTDLSADFSADIKENLLIFFELLETSL
TNGVIAKKGAGRDKANLILDNKNELLEAITTKDFATFTELFLSIDTDIRVGSSKDEILSALKKDFSAQKQDLVGSKSKPG
EIRKFVDKIKHGQLIEKYQNQAFEIAENLQKFVIEFYQSYLERKKNENAFEYSDIAHFAIEILEENPDIRETLREHYDEI
MIDEYQDTSHTQERMLELLSNGHNLFMVGDIKQSIYGFRLADPGLFLEKYKDYAKTENPNQLIRLKENFRSRGEVLTFTN
DIFKHLMDEKLGEMTYGKEEALVQGNITDYPVESEKDFYPELLLYKENTSDEETDESEVRISDGEIKGAAQEIKELIEAG
VEPKDIAILVRSKSNNNKIEDILLSYDIPVVLDEGRVDFLKSMEVLIMLDVLRAIDNPLYDLSLVAMLRSPLFGFNEDEL
TRISTQGSHDLRFWDKILLSLNKEGQNPELINPSLEDKLKAFYKKFTEWRKLVNQVAIHDLLWKIYTETYYFDYVGALKN
GEMRQANLQALAVRAESYESSGYKGLFKFVRLINKFMEQNNDLASVNIKLPQNAVRVMTFHKSKGLEFDYVFLMNLQSRF
NDRDLKEDVILSRENGLGMKLIADLKDEADVITDFPYALVKMETFPYMVNKDLKQRAALSEEMRVLYVAFTRARKKLYLV
GKIKETDKKSGLDLYDNASLEGKILEDKFRNSSRGFQHWILALQNATKLPMKLNVYTKEELEAEKLEFTSQPDFKKLVEE
SEKFDNIMAYSDEIQKAQKIMNYEYPNQAATELSSIQTPSQVKKRSYEKQLQVGEIQPISEFTRVKKLDFSDFGPKKVTA
AEIGSATHSFMQYADFSQADLFSFQATLDEMGFDEKIKNQIDIAKILTLFDTDFGQFLSENVDKTVKEAPFSMLRTDEFA
KEQYIVRGICDGFVKLTDKIVLFDYKTDRFTSSSAISEIKERYRDQMNLYSEALKKAYDVNQVDKYLILLGGPQQVFVEK
LDD

Nucleotide


Download         Length: 3612 bp        

>NTDB_id=46054 LILO_RS00025 WP_015425595.1 6065..9676(+) (rexA) [Lactococcus lactis subsp. lactis IO-1]
ATGAGTGAAGTAAAATTAACTCCAGAGCAAAATGAAGCCATTCATAGTTCTGGTAAGAATATTCTAGTTTCAGCGAGTGC
TGGTTCCGGAAAAACTTTTGTTATGGCTCAGAGAATTGTCGAGAAAGTCAAACAAGGAATTGAAATTGATCGACTTTTCA
TTTCCACATTTACAAAAAAAGCAGCAAGCGAATTACGGATGCGGCTTGAGCGAGATTTAAAAAAAGCCAGACAAGAAAGT
TCTGATGAAAATCAAGCTCGTAGGTTGACACTTGCTTTACATAACTTGTCAAATGCTGATATTGGAACTATGGATAGTTT
CACCCAAAAATTGACAAAAACGAATTTCAATCGAGTAAATATTGACCCGAATTTCCGAATCTTAGCTGATCAAACAGAGA
GTGATTTAATTAGACAAGAAGTTTTTGAACAATTGGTTGAGTCTTATCTATCAGGAGATGAAGGATTGAATATTTCAAAA
GAAAAATTTGAAGAACTTATAAAAAATTTTTCTAAAGACAGAAATATTGCTGGTTTTCAAAAAGTGGTTTACACTACTTA
CCGTTTTGCATCAGCAACTGAAAATCCAATAAAGTGGTTAGAAAATCAATTTTTAAAAGGTTTTGAAACATATAAATCAC
TGACAGACTTGTCTGCAGATTTTTCAGCAGATATAAAAGAGAATTTACTGATATTTTTTGAACTTCTAGAAACTTCATTA
ACCAATGGAGTAATTGCTAAAAAAGGGGCTGGACGTGATAAGGCCAACCTTATTTTAGATAATAAAAATGAACTCTTAGA
AGCAATAACCACTAAAGATTTTGCAACTTTCACAGAACTATTTTTATCAATAGATACAGATATTCGAGTGGGTTCTTCAA
AAGATGAAATACTTTCGGCTCTGAAAAAAGATTTTTCAGCACAAAAGCAAGACTTAGTCGGCTCGAAATCCAAACCTGGA
GAAATTCGGAAGTTTGTTGATAAAATAAAACATGGTCAGTTGATTGAAAAATATCAAAATCAAGCATTTGAAATCGCAGA
AAATTTACAAAAATTTGTTATTGAGTTTTACCAAAGTTATTTAGAACGTAAAAAGAATGAAAATGCTTTTGAGTACTCTG
ATATCGCACACTTTGCCATCGAAATTTTAGAGGAAAATCCAGATATACGTGAAACTTTAAGAGAACATTATGATGAAATC
ATGATTGATGAGTATCAGGATACCAGCCACACTCAGGAGCGAATGCTGGAACTTTTATCGAATGGACATAATCTCTTCAT
GGTTGGTGATATTAAGCAATCAATTTATGGCTTTCGTTTAGCTGACCCTGGCCTCTTTTTAGAAAAATATAAAGACTATG
CCAAGACAGAAAATCCAAATCAATTAATTCGCCTAAAAGAAAACTTTCGTTCACGTGGTGAGGTTTTAACATTTACAAAT
GATATCTTTAAACACCTGATGGATGAAAAATTAGGTGAGATGACTTATGGCAAAGAAGAAGCCTTAGTTCAAGGAAACAT
TACTGATTATCCAGTTGAATCTGAGAAAGATTTTTATCCAGAACTTCTTTTATACAAAGAAAATACAAGTGATGAAGAAA
CAGATGAATCCGAAGTAAGAATTTCGGATGGAGAGATTAAAGGAGCAGCTCAAGAAATAAAAGAATTGATTGAAGCTGGA
GTTGAGCCAAAAGATATAGCAATCTTGGTTCGTTCTAAATCAAATAATAATAAAATTGAGGATATTCTGCTTAGTTACGA
TATTCCGGTCGTTCTTGATGAAGGACGAGTTGATTTTTTGAAATCAATGGAAGTCTTAATTATGCTAGACGTTTTACGAG
CAATTGATAATCCACTCTATGATTTATCATTGGTTGCGATGTTAAGGTCTCCGTTATTTGGATTTAATGAAGATGAATTA
ACGAGAATCAGTACTCAAGGAAGCCATGACCTTCGATTTTGGGATAAAATTCTTTTGTCACTTAATAAAGAAGGACAAAA
TCCAGAACTTATCAATCCTTCCTTAGAGGACAAGCTTAAAGCATTTTACAAGAAATTTACAGAGTGGCGTAAACTTGTAA
ACCAAGTTGCAATTCATGATTTACTTTGGAAAATATATACAGAAACCTACTATTTTGACTATGTTGGTGCCTTAAAAAAT
GGTGAAATGCGTCAAGCGAACTTACAAGCCTTAGCGGTTCGAGCAGAATCATATGAAAGTTCTGGTTATAAAGGATTATT
TAAATTTGTAAGATTAATCAACAAATTTATGGAACAAAATAATGATTTAGCTTCTGTTAATATAAAACTTCCTCAAAATG
CTGTTCGAGTGATGACCTTCCATAAATCAAAAGGATTAGAATTTGATTATGTCTTTTTAATGAATTTACAATCTCGTTTC
AACGATCGTGATTTGAAAGAAGATGTTATCCTAAGTCGTGAAAATGGTTTAGGAATGAAGCTTATTGCCGATTTAAAGGA
TGAAGCAGATGTTATAACTGATTTCCCTTATGCTTTAGTGAAAATGGAAACATTCCCTTATATGGTGAATAAAGACTTAA
AACAAAGAGCAGCTCTCTCAGAAGAAATGCGTGTTTTATATGTTGCATTTACAAGAGCAAGGAAAAAACTTTATCTTGTC
GGAAAAATAAAAGAAACGGATAAAAAATCAGGACTTGACCTTTACGATAATGCAAGTTTAGAAGGAAAGATTTTAGAAGA
TAAATTTCGTAATTCAAGTCGCGGTTTTCAACACTGGATATTGGCGCTTCAAAATGCCACAAAACTTCCGATGAAACTCA
ATGTCTACACAAAAGAAGAGTTGGAAGCAGAAAAACTTGAATTTACAAGTCAACCTGATTTCAAAAAATTGGTCGAAGAA
TCGGAAAAATTTGATAATATCATGGCCTATTCTGATGAAATACAAAAAGCTCAAAAAATTATGAATTATGAATATCCAAA
TCAAGCAGCAACAGAGCTTTCAAGTATTCAAACACCAAGTCAGGTTAAAAAACGAAGCTATGAAAAACAATTACAAGTGG
GTGAAATTCAACCGATAAGTGAATTTACTCGGGTCAAAAAGCTAGATTTTTCTGATTTTGGTCCTAAGAAAGTTACTGCT
GCAGAAATCGGTTCGGCAACACATAGTTTTATGCAGTATGCAGATTTTTCTCAAGCAGATTTATTTAGTTTTCAAGCGAC
ACTTGATGAAATGGGATTTGATGAAAAAATAAAAAATCAAATTGATATTGCTAAAATTTTGACTTTGTTTGATACAGATT
TCGGTCAGTTTTTATCAGAAAATGTTGATAAAACAGTTAAAGAAGCACCATTTTCAATGTTGAGAACAGATGAATTTGCT
AAAGAGCAGTATATTGTTCGGGGAATTTGTGATGGATTTGTTAAACTTACTGATAAAATCGTTCTATTTGATTATAAGAC
AGATAGATTTACAAGTTCTTCAGCTATTTCTGAAATAAAAGAGCGTTATAGAGATCAGATGAATCTTTATAGTGAGGCTT
TGAAAAAAGCCTACGATGTCAACCAAGTTGACAAGTATCTCATTTTATTAGGAGGCCCTCAGCAAGTTTTTGTTGAAAAA
CTAGATGATTAG

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(463-879)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(6-453)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

41.337

100

0.416