Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   JHS88_RS07130 Genome accession   NZ_CP068647
Coordinates   1571097..1572641 (-) Length   514 a.a.
NCBI ID   WP_029559987.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TJ-187     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1566097..1577641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS88_RS07110 (JHS88_07100) - 1566144..1567541 (-) 1398 WP_162457591.1 lipopolysaccharide biosynthesis protein -
  JHS88_RS07115 (JHS88_07105) - 1567534..1568706 (-) 1173 WP_069543589.1 glycosyltransferase family 4 protein -
  JHS88_RS07120 (JHS88_07110) - 1568717..1569901 (-) 1185 WP_140391304.1 glycosyltransferase -
  JHS88_RS07125 (JHS88_07115) - 1570052..1571122 (-) 1071 WP_140391305.1 glycosyltransferase family 4 protein -
  JHS88_RS07130 (JHS88_07120) luxO 1571097..1572641 (-) 1545 WP_029559987.1 sigma-54-dependent transcriptional regulator Regulator
  JHS88_RS07135 (JHS88_07125) - 1572913..1573293 (-) 381 WP_162457590.1 Hpt domain-containing protein -
  JHS88_RS07140 (JHS88_07130) - 1573306..1573992 (-) 687 WP_140391306.1 CpsD/CapB family tyrosine-protein kinase -
  JHS88_RS07145 (JHS88_07135) - 1573992..1576058 (-) 2067 WP_229626319.1 SLBB domain-containing protein -
  JHS88_RS07150 (JHS88_07140) - 1576091..1576993 (-) 903 WP_140391308.1 OmpA family protein -
  JHS88_RS07155 (JHS88_07145) - 1577020..1577340 (-) 321 WP_005454817.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 57448.33 Da        Isoelectric Point: 5.9796

>NTDB_id=460432 JHS88_RS07130 WP_029559987.1 1571097..1572641(-) (luxO) [Vibrio parahaemolyticus strain TJ-187]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINKNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VTLAKHFLTTYAKEDKKKFSNIDTEAQHVIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVAHLPAQLTQKKTQARTVTPV
HVESSSPSNNLNGHNAPAMQTQPVEPVQPVQEVPAQQTQPTVGVETPSHSLSPYFNADGSIRPMWQVEREAIQNAIAYCD
GNVLNAAVMLELSPSTVYRKKQAWEADEVNLEQS

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=460432 JHS88_RS07130 WP_029559987.1 1571097..1572641(-) (luxO) [Vibrio parahaemolyticus strain TJ-187]
ATGAGACCAAGGGTGTTACTGGTAGAAGACTCTACCTCATTAGCCATACTTTATAAGCAATATGTGAAAGATGAGCCTTA
CGACATTTTCCATGTCGAGACCGGTCGTGATGCCATTCAATTCATTGAACGCAGCAAGCCTCAACTGATCATTTTGGATT
TAAAACTTCCAGACATGTCGGGTGAAGACGTGTTGGATTGGATCAATAAAAATGATATTCCCACTTCGGTCATCATCGCC
ACCGCACACGGCAGCGTCGACTTAGCTGTAAACTTGATACAAAAAGGCGCTGAAGACTTCTTAGAAAAACCCATCAATGC
CGACCGTCTTAAAACCTCTGTGGCACTGCATCTAAAACGAGCCAAATTGGAAGACTTGGTAGAAAACATTCAGTCTACCT
TCGATCGCCACAACTATCATGGCTTCATTGGCTCAAGCCTACCGATGCAAGCGGTATACAAAACGATAGATGCCGTCGCA
CCAACCTCGGCCAGCGTCTTTATCGTCGGTGAAAGTGGCACGGGTAAAGAAGTGTGCGCCGAAGCCGTTCATCGCCAAAG
TGATCGCAGAGACAAACCTTTCATCGCCATAAACTGTGGTGCGATACCACGAGATTTGATGGAAAGTGAGATTTTCGGTC
ACGTTAAAGGGGCGTTTACTGGCGCAACCACAGACAGAAAAGGCGCAGCAACATTAGCCCACGGTGGGACGCTATTTCTC
GACGAGCTGTGTGAAATGGAACTGGAAATGCAGAAAAAGCTACTGCGCTTCTTACAAACGGGCACTTACACCCCACTTGG
CGGCACAAAAGAGATGAAAGTCGATGTACGTATCATTTGCGCCACCAACCGAGATCCACTTACAGAAGTGGAAGAAGGAC
GCTTCCGCGAAGACTTGTATTACCGTGTTCACGTTGTGCCGATTGATATGCCACCTTTGAGAGAAAGAGGAAGTGACATT
GTCACGCTAGCCAAGCATTTTCTCACAACTTACGCCAAAGAGGACAAGAAAAAATTCTCTAACATTGATACTGAAGCGCA
GCACGTGATCAAACATTACGAATGGCCTGGCAACGTAAGGCAGCTACAAAACATCATTCGTAATATCGTGGTACTCAACA
ATGATGAAAAAGTCACGGTGGCTCACCTGCCCGCTCAGTTAACGCAAAAGAAAACGCAGGCAAGAACCGTAACCCCTGTG
CACGTCGAATCATCAAGCCCGAGCAACAATCTCAACGGACATAATGCTCCAGCGATGCAAACACAACCCGTTGAACCAGT
GCAACCTGTTCAAGAGGTGCCTGCTCAACAAACACAACCTACTGTCGGCGTTGAAACACCGAGTCATTCCTTATCGCCAT
ACTTTAATGCAGACGGAAGTATCCGACCAATGTGGCAAGTCGAACGTGAAGCGATTCAAAACGCGATCGCTTATTGTGAT
GGTAACGTGCTCAATGCCGCGGTGATGCTGGAGCTAAGCCCTTCAACGGTCTATCGTAAAAAACAAGCGTGGGAAGCGGA
TGAAGTTAATCTCGAACAATCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory protein, Fis family (HTH_8)

(464-500)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.098

97.082

0.477