Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   HV129_RS03980 Genome accession   NZ_CP056747
Coordinates   842212..843645 (-) Length   477 a.a.
NCBI ID   WP_003861864.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain RHBSTW-00217     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 837212..848645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV129_RS03950 (HV129_03950) elbB 838744..839397 (+) 654 WP_047051241.1 isoprenoid biosynthesis glyoxalase ElbB -
  HV129_RS03955 (HV129_03955) mtgA 839394..840119 (+) 726 WP_047051240.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  HV129_RS03960 (HV129_03960) npr 840159..840431 (-) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  HV129_RS03965 (HV129_03965) rapZ 840428..841282 (-) 855 WP_003861870.1 RNase adapter RapZ -
  HV129_RS03970 (HV129_03970) ptsN 841328..841819 (-) 492 WP_003861869.1 PTS IIA-like nitrogen regulatory protein PtsN -
  HV129_RS03975 (HV129_03975) hpf 841902..842189 (-) 288 WP_003861866.1 ribosome hibernation promoting factor -
  HV129_RS03980 (HV129_03980) rpoN/rpoN1 842212..843645 (-) 1434 WP_003861864.1 RNA polymerase factor sigma-54 Machinery gene
  HV129_RS03985 (HV129_03985) lptB 843693..844418 (-) 726 WP_003861862.1 LPS export ABC transporter ATP-binding protein -
  HV129_RS03990 (HV129_03990) lptA 844425..844979 (-) 555 WP_015571984.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  HV129_RS03995 (HV129_03995) lptC 844948..845523 (-) 576 WP_047051239.1 LPS export ABC transporter periplasmic protein LptC -
  HV129_RS04000 (HV129_04000) kdsC 845520..846086 (-) 567 WP_047051238.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  HV129_RS04005 (HV129_04005) kdsD 846101..847087 (-) 987 WP_003861853.1 arabinose-5-phosphate isomerase KdsD -
  HV129_RS04010 (HV129_04010) - 847101..848078 (-) 978 WP_047051237.1 calcium/sodium antiporter -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54099.96 Da        Isoelectric Point: 4.3358

>NTDB_id=460430 HV129_RS03980 WP_003861864.1 842212..843645(-) (rpoN/rpoN1) [Enterobacter hormaechei strain RHBSTW-00217]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVDAQQTQDTETLDSVDALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDE
ILESIGDDEIELEEIEAVLKRVQRFDPIGVAAKDLRDCLLIQLSQFAKETPWIDEARLIISDHLDLLANHDFRTLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNGRWVVELNADSIPRLQINQQYASMCTSARNDADNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEFMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=460430 HV129_RS03980 WP_003861864.1 842212..843645(-) (rpoN/rpoN1) [Enterobacter hormaechei strain RHBSTW-00217]
ATGAAGCAAGGTTTGCAATTACGGCTCAGCCAGCAACTGGCCATGACGCCGCAGCTACAGCAGGCAATCCGTCTGTTGCA
GCTGTCCACGTTAGAACTCCAGCAGGAGCTCCAGCAGGCGCTGGACAGTAATCCGCTGCTGGAGCAAACCGATCTTCATG
ACGAGGTAGACGCCCAGCAGACGCAGGACACAGAAACGCTAGACTCCGTAGATGCGCTCGAACAGAAAGAGATGCCGGAC
GAACTGCCGCTGGATGCCAGCTGGGACGAAATCTACACCGCGGGTACCCCTTCCGGGACGCGTGCAGACTACCAGGACGA
TGAACTCCCGGTCTACCAGGGCGAAACCACCCAGTCGCTTCAGGACTACCTGATGTGGCAGGTAGAGCTGACCCCTTTCT
CCGATACCGATCGCGCCATTGCCACCTCGATTGTCGATGCCGTTGACGACACGGGCTATTTGACCGTGACGCTGGACGAG
ATTCTGGAAAGCATCGGCGATGACGAGATTGAACTGGAAGAGATCGAAGCCGTTCTGAAACGCGTTCAGCGTTTCGACCC
AATTGGCGTCGCCGCGAAAGATCTGCGCGACTGCCTTCTGATCCAGCTTTCGCAGTTTGCCAAAGAGACACCGTGGATTG
ACGAAGCCCGGCTCATCATCAGCGATCATCTGGATCTGCTGGCGAATCACGACTTCCGCACCCTGATGCGCGTCACGCGC
CTGAAAGAAGAGGTGCTGAAGGAAGCGGTGAATCTGATCCAGTCCCTCGATCCGCGTCCGGGGCAGTCGATCCAGACCAG
CGAACCGGAATATGTCATTCCTGATGTGCTGGTGAGAAAACACAATGGCCGGTGGGTCGTTGAACTGAACGCCGACAGCA
TTCCTCGCCTGCAAATCAACCAGCAATACGCCTCCATGTGCACCAGCGCACGTAATGACGCTGATAATCAATATATTCGC
AGCAACCTTCAGGAAGCACGCTGGTTGATCAAGAGTCTGGAGAGCCGTAATGACACGCTGCTGCGCGTCAGCCGCTGTAT
TGTCGAACAGCAGCAGGCGTTCTTTGAGCAGGGCGAAGAGTTTATGAAACCGATGGTGCTGGCGGACATCGCCCAGGCCG
TCGAGATGCATGAATCAACCATTTCCCGCGTGACCACGCAGAAGTATCTGCACAGCCCACGCGGTATTTTTGAGCTTAAG
TATTTCTTCTCCAGCCACGTGAACACCGAAGGCGGCGGCGAAGCCTCGTCAACGGCCATTCGCGCACTGGTGAAGAAGTT
GATCGCCGCGGAGAACCCCGCGAAGCCACTCAGTGACAGTAAGTTAACCACCATGCTGTCCGATCAGGGTATTATGGTGG
CACGTCGTACTGTCGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCTAACCAGCGTAAACAACTGGTTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.347

100

0.48