Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   JHS79_RS08455 Genome accession   NZ_CP068641
Coordinates   1622379..1623923 (-) Length   514 a.a.
NCBI ID   WP_140125989.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain VP157     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1617379..1628923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS79_RS08435 (JHS79_08290) - 1617393..1618823 (-) 1431 WP_180700460.1 lipopolysaccharide biosynthesis protein -
  JHS79_RS08440 (JHS79_08295) - 1618816..1619988 (-) 1173 WP_140125986.1 glycosyltransferase family 4 protein -
  JHS79_RS08445 (JHS79_08300) - 1619999..1621183 (-) 1185 WP_193293136.1 glycosyltransferase -
  JHS79_RS08450 (JHS79_08305) - 1621334..1622404 (-) 1071 WP_140125988.1 glycosyltransferase family 4 protein -
  JHS79_RS08455 (JHS79_08310) luxO 1622379..1623923 (-) 1545 WP_140125989.1 sigma-54-dependent transcriptional regulator Regulator
  JHS79_RS08460 (JHS79_08315) - 1624195..1624575 (-) 381 WP_005454845.1 Hpt domain-containing protein -
  JHS79_RS08465 (JHS79_08320) - 1624588..1625274 (-) 687 WP_005454821.1 CpsD/CapB family tyrosine-protein kinase -
  JHS79_RS08470 (JHS79_08325) - 1625274..1627295 (-) 2022 Protein_1531 SLBB domain-containing protein -
  JHS79_RS08475 (JHS79_08330) - 1627373..1628275 (-) 903 WP_025571138.1 OmpA family protein -
  JHS79_RS08480 (JHS79_08335) - 1628302..1628622 (-) 321 WP_005454817.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 57401.28 Da        Isoelectric Point: 5.8567

>NTDB_id=460343 JHS79_RS08455 WP_140125989.1 1622379..1623923(-) (luxO) [Vibrio parahaemolyticus strain VP157]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVVPIDMPPLRERGGDI
VTLAKHFLTTYAKEDKKKFSNIDTEAQHVIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVAHLPAQLTPKKTQARTVTPV
HVESSSPSNNLNGHNAPAMQTQPIEPVQPVQEVPAQQTQPTVGVETPSHSLSPYFNADGSIRPMWQVEREAIQNAIAYCD
GNVLNAAVMLELSPSTVYRKKQAWEADEVNLEQS

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=460343 JHS79_RS08455 WP_140125989.1 1622379..1623923(-) (luxO) [Vibrio parahaemolyticus strain VP157]
ATGAGACCAAGGGTGTTATTGGTAGAAGACTCTACCTCATTAGCCATACTTTATAAGCAATATGTGAAAGATGAGCCTTA
CGACATTTTCCATGTCGAGACAGGTCGTGATGCCATTCAATTCATTGAACGCAGCAAGCCTCAACTGATCATTTTGGATT
TAAAACTTCCAGACATGTCGGGTGAAGACGTGTTGGATTGGATCAATCAAAATGATATTCCCACTTCGGTCATCATCGCC
ACCGCACACGGCAGCGTCGACTTAGCTGTAAACTTGATACAAAAAGGCGCTGAAGACTTCTTAGAAAAACCCATCAATGC
CGACCGTCTTAAAACCTCTGTGGCACTGCATCTAAAACGAGCCAAATTGGAAGACTTGGTAGAAAACATTCAGTCTACCT
TCGATCGCCACAACTATCATGGCTTCATTGGCTCAAGCCTACCGATGCAAGCGGTATATAAAACGATAGATGCCGTCGCA
CCAACCTCGGCCAGCGTCTTTATCGTCGGTGAAAGTGGCACGGGTAAAGAAGTGTGCGCCGAGGCCGTTCATCGCCAAAG
TGATCGCAGAGACAAACCGTTCATCGCCATAAACTGTGGTGCGATACCACGAGATTTGATGGAAAGTGAGATTTTCGGTC
ACGTTAAAGGAGCGTTTACTGGCGCAACCACAGACAGAAAAGGCGCGGCAACATTGGCGCACGGTGGGACGCTATTTCTC
GACGAGCTGTGTGAAATGGAACTGGAAATGCAGAAAAAGCTACTGCGTTTCTTACAAACGGGCACTTACACCCCACTTGG
CGGCACGAAAGAGATGAAAGTCGATGTACGTATCATTTGCGCCACCAACCGAGATCCACTTACAGAGGTGGAAGAAGGAC
GCTTCCGCGAAGACTTATATTACCGTGTTCACGTTGTGCCGATTGATATGCCACCTTTGAGAGAAAGAGGAGGTGACATT
GTCACGTTGGCCAAGCATTTTCTCACGACTTACGCCAAAGAGGACAAGAAAAAATTCTCTAACATTGATACCGAAGCGCA
GCACGTGATCAAACATTACGAATGGCCTGGCAACGTAAGGCAGCTACAAAACATCATTCGTAATATCGTGGTACTCAACA
ATGATGAAAAAGTCACGGTAGCTCACCTGCCCGCTCAGTTAACTCCAAAGAAAACGCAGGCAAGAACCGTAACCCCTGTG
CACGTCGAATCATCAAGCCCGAGCAACAATCTCAACGGACATAATGCTCCAGCGATGCAAACACAACCCATTGAACCAGT
GCAACCTGTTCAAGAGGTGCCTGCTCAACAAACACAACCTACTGTCGGCGTTGAAACACCGAGTCATTCCTTATCGCCGT
ACTTTAATGCAGACGGAAGTATCCGACCAATGTGGCAAGTCGAACGTGAAGCGATTCAAAACGCGATCGCCTATTGTGAT
GGTAACGTGCTCAATGCCGCTGTGATGCTGGAGCTAAGCCCTTCAACGGTCTATCGTAAAAAACAAGCGTGGGAAGCGGA
TGAAGTTAATCTCGAACAATCCTGA

Domains

Predicted by InterProScan.

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory protein, Fis family (HTH_8)

(464-500)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.299

97.082

0.479