Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV243_RS16230 Genome accession   NZ_CP056717
Coordinates   3275058..3275672 (-) Length   204 a.a.
NCBI ID   WP_181603855.1    Uniprot ID   -
Organism   Citrobacter sp. RHBSTW-00599     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3270058..3280672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV243_RS16215 (HV243_16210) helD 3270282..3272336 (-) 2055 WP_019076416.1 DNA helicase IV -
  HV243_RS16220 (HV243_16215) - 3272462..3272908 (+) 447 WP_016152485.1 YccF domain-containing protein -
  HV243_RS16225 (HV243_16220) yccS 3272927..3275080 (+) 2154 WP_016152484.1 YccS family putative transporter -
  HV243_RS16230 (HV243_16225) sxy/tfoX 3275058..3275672 (-) 615 WP_181603855.1 TfoX/Sxy family DNA transformation protein Regulator
  HV243_RS16235 (HV243_16230) sulA 3275889..3276398 (+) 510 WP_046275730.1 SOS-induced cell division inhibitor SulA -
  HV243_RS16240 (HV243_16235) ompA 3276756..3277814 (+) 1059 WP_046275731.1 porin OmpA -
  HV243_RS16245 (HV243_16240) matP 3277912..3278364 (-) 453 WP_016152480.1 macrodomain Ter protein MatP -
  HV243_RS16250 (HV243_16245) - 3278550..3280310 (+) 1761 WP_016156136.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23152.52 Da        Isoelectric Point: 8.6226

>NTDB_id=460329 HV243_RS16230 WP_181603855.1 3275058..3275672(-) (sxy/tfoX) [Citrobacter sp. RHBSTW-00599]
MKEKSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVASGELYLRACEQSAQFCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=460329 HV243_RS16230 WP_181603855.1 3275058..3275672(-) (sxy/tfoX) [Citrobacter sp. RHBSTW-00599]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCGGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTAGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTTCTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGGCGACCAGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAGAACCAGCAGCAGTTAGTATCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATTTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGCTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGAGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.657

98.529

0.676