Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   JHS79_RS03710 Genome accession   NZ_CP068641
Coordinates   801599..802978 (+) Length   459 a.a.
NCBI ID   WP_042765575.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain VP157     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 796599..807978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS79_RS03695 (JHS79_03675) - 797394..797999 (-) 606 WP_005481596.1 YtjB family periplasmic protein -
  JHS79_RS03700 (JHS79_03680) serB 798091..799071 (+) 981 WP_020841223.1 phosphoserine phosphatase -
  JHS79_RS03705 (JHS79_03685) - 799114..801462 (-) 2349 WP_020835426.1 PilZ domain-containing protein -
  JHS79_RS03710 (JHS79_03690) radA/sms 801599..802978 (+) 1380 WP_042765575.1 DNA repair protein RadA Machinery gene
  JHS79_RS03715 (JHS79_03695) fusA 803195..805285 (+) 2091 WP_005456593.1 elongation factor G -
  JHS79_RS03720 (JHS79_03700) - 805486..806412 (-) 927 WP_237301144.1 LysR substrate-binding domain-containing protein -
  JHS79_RS03725 (JHS79_03705) - 806511..806720 (+) 210 WP_005456575.1 DUF1127 domain-containing protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49207.61 Da        Isoelectric Point: 7.4131

>NTDB_id=460325 JHS79_RS03710 WP_042765575.1 801599..802978(+) (radA/sms) [Vibrio parahaemolyticus strain VP157]
MAKAKRAYVCNDCGADFPRWQGQCNACGAWNTVTEVRIAASPTVARNERLSGYAGSATESKVQTLSEIDLQEVPRFTSGF
KELDRVLGGGVVPGAAILIGGNPGAGKSTLLLQTMCTLSGLMPTLYVTGEESLQQVAMRASRLGLPKEHLKMLSETNVDK
ICQIAEKEQPRIMVIDSIQVMHVSDVQSSPGSVAQVRESATALTRYAKQNNVAVFIVGHVTKDGTLAGPKVLEHIIDCSV
LLDGGTDSRFRTLRSHKNRFGAVNELGVFAMTGQGLKEVSNPSAIFLSRGEEETSGSSVMVVWEGTRPLLVEIQALVDYS
QLANPRRVAVGLEQNRLSLLLAVLHKHGGLQMADQDVFVNVVGGVKVTETSADLALVMALLSSFRDRPLPKDVVVFGEVG
LAGEIRPVPSGQERLNEAFKHGFKKAIVPAANMPKGGIPGMQIHGVKKLSEAIEAFDEL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=460325 JHS79_RS03710 WP_042765575.1 801599..802978(+) (radA/sms) [Vibrio parahaemolyticus strain VP157]
ATGGCGAAAGCAAAACGAGCGTATGTTTGTAATGATTGTGGCGCGGATTTTCCACGTTGGCAGGGACAATGTAATGCGTG
TGGTGCATGGAATACGGTCACAGAGGTGCGCATTGCTGCTTCGCCAACCGTTGCTCGCAATGAACGCTTAAGCGGTTATG
CTGGTTCGGCGACAGAATCGAAAGTCCAAACCTTATCTGAAATCGATCTGCAAGAAGTGCCGCGATTCACTAGTGGTTTT
AAAGAGCTCGATCGTGTGCTTGGTGGTGGTGTCGTACCTGGCGCGGCGATTCTGATAGGTGGTAACCCTGGCGCGGGTAA
GTCGACGTTGCTTCTTCAAACTATGTGTACGTTATCGGGGCTGATGCCGACACTTTACGTTACGGGTGAGGAATCGCTTC
AACAGGTTGCGATGCGCGCGTCTCGTCTTGGTCTGCCAAAAGAGCACCTGAAGATGCTATCAGAAACCAACGTCGATAAA
ATTTGCCAAATTGCAGAGAAAGAGCAGCCCAGAATTATGGTGATTGACTCGATTCAGGTTATGCACGTTTCTGATGTTCA
ATCGTCACCGGGCAGTGTTGCTCAGGTGCGAGAATCTGCGACGGCACTGACGCGATACGCAAAACAGAACAATGTTGCGG
TATTTATTGTTGGTCACGTAACGAAAGATGGTACTCTTGCCGGCCCTAAAGTCCTTGAGCACATTATTGACTGTTCTGTC
TTGCTTGATGGCGGAACAGATAGTCGTTTCCGTACACTGCGCAGCCACAAAAACCGTTTTGGTGCGGTAAATGAATTAGG
CGTGTTTGCGATGACGGGGCAGGGGCTGAAAGAAGTAAGTAACCCATCGGCGATTTTCCTTTCTCGTGGCGAAGAAGAGA
CGTCAGGATCTTCGGTCATGGTTGTGTGGGAAGGTACACGTCCTCTATTAGTAGAGATTCAAGCGCTGGTGGACTACTCG
CAATTGGCAAACCCTCGTCGCGTAGCGGTTGGTTTGGAGCAGAATCGTCTCTCCTTATTATTAGCCGTACTGCATAAGCA
CGGTGGTCTGCAAATGGCTGATCAAGACGTGTTTGTGAATGTAGTCGGCGGCGTTAAGGTAACAGAAACCAGTGCGGATC
TTGCTTTAGTGATGGCGTTACTATCAAGCTTTCGCGATCGTCCGTTGCCAAAAGATGTGGTGGTATTTGGCGAAGTTGGT
TTGGCTGGCGAGATTCGTCCGGTACCTAGTGGCCAAGAGCGTTTGAACGAGGCATTTAAGCACGGCTTCAAAAAGGCAAT
TGTCCCGGCTGCTAATATGCCAAAAGGTGGCATTCCGGGGATGCAAATCCACGGCGTTAAGAAGTTGTCAGAGGCTATTG
AGGCTTTTGACGAGCTGTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(83-224)

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.711

99.346

0.464
  radA Streptococcus mitis SK321

44.079

99.346

0.438
  radA Streptococcus pneumoniae Rx1

43.516

99.129

0.431
  radA Streptococcus pneumoniae D39

43.516

99.129

0.431
  radA Streptococcus pneumoniae R6

43.516

99.129

0.431
  radA Streptococcus pneumoniae TIGR4

43.516

99.129

0.431
  radA Streptococcus mitis NCTC 12261

43.516

99.129

0.431