Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV233_RS08985 Genome accession   NZ_CP056711
Coordinates   1788240..1788866 (+) Length   208 a.a.
NCBI ID   WP_023311030.1    Uniprot ID   A0A1Z3N2L7
Organism   Enterobacter asburiae strain RHBSTW-00542     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1783240..1793866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV233_RS08965 (HV233_08975) - 1783640..1785400 (-) 1761 WP_045354505.1 Lon protease family protein -
  HV233_RS08970 (HV233_08980) matP 1785587..1786039 (+) 453 WP_008499929.1 macrodomain Ter protein MatP -
  HV233_RS08975 (HV233_08985) ompA 1786103..1787158 (-) 1056 WP_023311028.1 porin OmpA -
  HV233_RS08980 (HV233_08990) sulA 1787513..1788022 (-) 510 WP_032668147.1 SOS-induced cell division inhibitor SulA -
  HV233_RS08985 (HV233_08995) sxy/tfoX 1788240..1788866 (+) 627 WP_023311030.1 TfoX/Sxy family DNA transformation protein Regulator
  HV233_RS08990 (HV233_09000) yccS 1788823..1790985 (-) 2163 WP_045354509.1 YccS family putative transporter -
  HV233_RS08995 (HV233_09005) - 1791005..1791451 (-) 447 WP_023311032.1 YccF domain-containing protein -
  HV233_RS09000 (HV233_09010) helD 1791575..1793629 (+) 2055 WP_045354511.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23906.46 Da        Isoelectric Point: 9.4588

>NTDB_id=460276 HV233_RS08985 WP_023311030.1 1788240..1788866(+) (sxy/tfoX) [Enterobacter asburiae strain RHBSTW-00542]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARASWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=460276 HV233_RS08985 WP_023311030.1 1788240..1788866(+) (sxy/tfoX) [Enterobacter asburiae strain RHBSTW-00542]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCCCCGTTGGGCGAGATTCATCATCGCGCGCT
GTTTGGAGGCTATACCCTGGCGGTGGATGATGCGGTTTTTGCCATGGTGTCAGACGGAGAGCTTTATCTTCGCGCCTGTG
AGGAGAGTGCGAAATACTGTGTAAAAAATGCCTCCTCTTTTTTAACGTTGATGAAGCGAGGCCGCCCGGTGCTGCTCAAC
TATTATCGTGTGGATGATGGATTATGGCAGGACAGGGAGCGGTTGCTTCAGCTCTCCTCGTTTGCGCTCAGTGCGGCAAG
AAAAGAACGCTATCAGCGCCATCAACGAAACCGACTTAAGGATCTGCCAAACCTGACCTTTCAGCTTGAAGTCTTGCTCT
TTGAAGCTGGCATTACCAATGAGGAAACGCTGCGGGCGCTGGGTGCAAGAGCGAGCTGGCTAAAGATGCGGGCAAAAAAC
AAAGCGCTCAGTATTAAAGTTCTCTTCGCGCTGGAAGGGGCTATCGAGGGGCTGCATGAGGCGGCACTCCCGGCAGGCAT
TCGCCGGGAGCTAACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Z3N2L7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567