Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   JHT10_RS04200 Genome accession   NZ_CP068630
Coordinates   931755..932411 (+) Length   218 a.a.
NCBI ID   WP_005462983.1    Uniprot ID   Q87G71
Organism   Vibrio parahaemolyticus strain TJ-20     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 926755..937411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHT10_RS04180 (JHT10_04180) - 927142..928098 (-) 957 WP_005499739.1 AAA family ATPase -
  JHT10_RS04185 (JHT10_04185) - 928414..930330 (+) 1917 WP_029803897.1 methyl-accepting chemotaxis protein -
  JHT10_RS04190 (JHT10_04190) - 930387..930587 (+) 201 WP_005462979.1 chromosome segregation ATPase -
  JHT10_RS04195 (JHT10_04195) - 930855..931526 (+) 672 WP_021450605.1 LuxR C-terminal-related transcriptional regulator -
  JHT10_RS04200 (JHT10_04200) qstR 931755..932411 (+) 657 WP_005462983.1 cyclic-di-GMP-binding transcriptional regulator CpsQ Regulator
  JHT10_RS04205 (JHT10_04205) - 932618..933208 (+) 591 WP_021450607.1 calcium-binding protein -
  JHT10_RS04210 (JHT10_04210) - 933270..934988 (+) 1719 WP_025525533.1 type I secretion system permease/ATPase -
  JHT10_RS04215 (JHT10_04215) - 934963..936303 (+) 1341 WP_005462986.1 HlyD family type I secretion periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 25148.87 Da        Isoelectric Point: 6.1324

>NTDB_id=460207 JHT10_RS04200 WP_005462983.1 931755..932411(+) (qstR) [Vibrio parahaemolyticus strain TJ-20]
MRNIMEQYTEKPEILMLTQQSLQSENFKEMLSKNTETKITIIDAKNPSYHELIPDRYFLLVDFSVDTPSDTLVYLKDSNK
VLGTIMLNLGYDLDTEELASWPHVKGIFGPLDSMEKVCRGLGAIVKGDNWLSRRLLDQLVNYYKGKESNNVSEPAIEVEL
TRREIQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKLEVKNRTQATSWAKRNL

Nucleotide


Download         Length: 657 bp        

>NTDB_id=460207 JHT10_RS04200 WP_005462983.1 931755..932411(+) (qstR) [Vibrio parahaemolyticus strain TJ-20]
ATGAGAAACATTATGGAACAGTACACGGAAAAGCCTGAAATCCTAATGCTCACTCAACAAAGTTTACAGAGTGAAAACTT
TAAGGAAATGCTTTCTAAAAATACAGAAACGAAGATAACAATCATCGATGCTAAAAACCCTAGCTATCATGAACTCATCC
CAGATCGTTACTTTTTATTGGTTGACTTTTCAGTTGATACACCTTCTGACACTTTAGTTTATCTAAAGGATAGCAATAAA
GTGCTAGGTACTATCATGCTTAATCTGGGTTATGACTTAGATACCGAAGAGCTAGCGTCTTGGCCTCATGTCAAAGGCAT
ATTTGGTCCATTGGACTCTATGGAAAAGGTTTGTCGAGGATTAGGGGCCATTGTTAAAGGAGATAATTGGCTATCAAGAA
GACTGTTGGATCAATTGGTAAATTATTACAAAGGAAAAGAATCGAATAACGTTTCAGAGCCTGCAATTGAAGTAGAACTG
ACACGACGCGAAATTCAGGTTCTTAAAATGTTGAAGGAGGGTGGTTCAAATATGGAAATAGCTGACTCACTCTTTATCAG
TGAACATACTATTAAATCGCATCTATACAATATTTTTAGAAAGTTAGAAGTGAAAAATAGGACGCAAGCCACAAGTTGGG
CAAAAAGAAACCTCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(160-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87G71

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

40.909

90.826

0.372