Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   JHT10_RS01095 Genome accession   NZ_CP068630
Coordinates   242768..243421 (+) Length   217 a.a.
NCBI ID   WP_029803758.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TJ-20     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 237768..248421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHT10_RS01075 (JHT10_01075) - 238557..240059 (+) 1503 WP_029861963.1 efflux transporter outer membrane subunit -
  JHT10_RS01080 (JHT10_01080) - 240245..240499 (+) 255 WP_011106259.1 hypothetical protein -
  JHT10_RS01085 (JHT10_01085) - 240871..241887 (+) 1017 WP_017447948.1 GGDEF domain-containing protein -
  JHT10_RS01090 (JHT10_01090) - 241953..242768 (+) 816 WP_005479824.1 helix-turn-helix domain-containing protein -
  JHT10_RS01095 (JHT10_01095) qstR 242768..243421 (+) 654 WP_029803758.1 LuxR C-terminal-related transcriptional regulator Regulator
  JHT10_RS01100 (JHT10_01100) - 243474..245882 (-) 2409 WP_029803759.1 beta-mannosidase -
  JHT10_RS01105 (JHT10_01105) - 246187..247770 (+) 1584 WP_005483978.1 BCCT family transporter -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 24616.22 Da        Isoelectric Point: 5.3293

>NTDB_id=460200 JHT10_RS01095 WP_029803758.1 242768..243421(+) (qstR) [Vibrio parahaemolyticus strain TJ-20]
MMNTNTTNNTVLLFTFNNIQGRGLQTAIEQNLEKPVLLTRGADVNFPSTRDEHYVAIVDSSLPELPEVKQTLSKLEHVDA
TVLVNAEPNLRVESLLTWSNLKGLFYFEDDFDKVMMGLKGILNGENWLSRDILNQLIGHLLSINNTVGELETKLEMELTR
REMQVLSALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAITWAKRNLL

Nucleotide


Download         Length: 654 bp        

>NTDB_id=460200 JHT10_RS01095 WP_029803758.1 242768..243421(+) (qstR) [Vibrio parahaemolyticus strain TJ-20]
ATGATGAATACCAACACAACCAACAACACCGTCTTATTGTTCACCTTCAACAACATTCAAGGTCGCGGCTTGCAAACCGC
TATTGAACAGAACCTAGAAAAACCCGTACTTTTAACCCGAGGCGCTGACGTCAATTTCCCTAGCACCCGCGATGAACACT
ATGTAGCGATAGTCGATAGCTCTCTCCCTGAATTGCCAGAGGTCAAACAAACACTCAGTAAGTTAGAGCACGTAGATGCG
ACTGTATTGGTCAACGCAGAACCGAATCTGAGGGTCGAGAGCTTACTCACTTGGTCAAACTTGAAAGGTTTGTTCTATTT
TGAGGATGATTTCGACAAGGTAATGATGGGGCTAAAAGGCATTTTGAACGGAGAGAATTGGCTCTCTCGCGATATTCTCA
ATCAACTGATTGGCCACCTATTGAGCATAAACAATACCGTCGGTGAGCTAGAAACGAAACTCGAAATGGAACTGACCCGT
CGTGAGATGCAAGTGCTCTCTGCACTGTGTCAGGGTGGCTCAAACCTTGATATTGCCGATTCGCTCTTTGTCAGTGAGCA
CACGGTGAAATCGCACCTCTATAGTATTTTCCGTAAGCTCGAAGTCAAAAACCGCATGCAGGCCATTACGTGGGCAAAAC
GTAATTTGCTCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

39.819

100

0.406