Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV249_RS08005 Genome accession   NZ_CP056691
Coordinates   1680102..1680728 (+) Length   208 a.a.
NCBI ID   WP_181542146.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain RHBSTW-00626     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1675102..1685728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV249_RS07985 (HV249_07990) - 1675501..1677261 (-) 1761 WP_045623334.1 Lon protease family protein -
  HV249_RS07990 (HV249_07995) matP 1677448..1677900 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  HV249_RS07995 (HV249_08000) ompA 1677966..1679018 (-) 1053 WP_017694761.1 porin OmpA -
  HV249_RS08000 (HV249_08005) sulA 1679375..1679884 (-) 510 WP_032610196.1 SOS-induced cell division inhibitor SulA -
  HV249_RS08005 (HV249_08010) sxy/tfoX 1680102..1680728 (+) 627 WP_181542146.1 TfoX/Sxy family DNA transformation protein Regulator
  HV249_RS08010 (HV249_08015) yccS 1680685..1682847 (-) 2163 WP_181542147.1 YccS family putative transporter -
  HV249_RS08015 (HV249_08020) - 1682866..1683312 (-) 447 WP_022647660.1 YccF domain-containing protein -
  HV249_RS08020 (HV249_08025) helD 1683435..1685489 (+) 2055 WP_045623332.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23933.46 Da        Isoelectric Point: 9.2159

>NTDB_id=460187 HV249_RS08005 WP_181542146.1 1680102..1680728(+) (sxy/tfoX) [Enterobacter hormaechei strain RHBSTW-00626]
MKKISYERIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELTEWFNALPESQGHHSAS

Nucleotide


Download         Length: 627 bp        

>NTDB_id=460187 HV249_RS08005 WP_181542146.1 1680102..1680728(+) (sxy/tfoX) [Enterobacter hormaechei strain RHBSTW-00626]
ATGAAAAAGATATCTTATGAACGGATTTATCAATCTCAAGAATACCTCTCTCCGCTGGGTGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTATTCGCGATGGTGTCTGACGGTGAGCTTTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCTTCTTTTCTGACCCTGATGAAACGAGGACGTCCTGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAACTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAAGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACTAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCGATTGAAGGATTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTACGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGTTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572