Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   JHS95_RS09135 Genome accession   NZ_CP068627
Coordinates   1798778..1800322 (+) Length   514 a.a.
NCBI ID   WP_237301635.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LH80     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1793778..1805322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS95_RS09110 (JHS95_09020) - 1794079..1794399 (+) 321 WP_005454817.1 STAS domain-containing protein -
  JHS95_RS09115 (JHS95_09025) - 1794426..1795328 (+) 903 WP_005495092.1 OmpA family protein -
  JHS95_RS09120 (JHS95_09030) - 1795406..1797427 (+) 2022 Protein_1610 SLBB domain-containing protein -
  JHS95_RS09125 (JHS95_09035) - 1797427..1798113 (+) 687 WP_005454821.1 CpsD/CapB family tyrosine-protein kinase -
  JHS95_RS09130 (JHS95_09040) - 1798126..1798506 (+) 381 WP_023625011.1 Hpt domain-containing protein -
  JHS95_RS09135 (JHS95_09045) luxO 1798778..1800322 (+) 1545 WP_237301635.1 sigma-54-dependent transcriptional regulator Regulator
  JHS95_RS09140 (JHS95_09050) - 1800297..1801367 (+) 1071 WP_140061964.1 glycosyltransferase family 4 protein -
  JHS95_RS09145 (JHS95_09055) - 1801518..1802702 (+) 1185 WP_140061963.1 glycosyltransferase -
  JHS95_RS09150 (JHS95_09060) - 1802713..1803885 (+) 1173 WP_024699474.1 glycosyltransferase family 4 protein -
  JHS95_RS09155 (JHS95_09065) - 1803878..1805308 (+) 1431 WP_237301636.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 57437.27 Da        Isoelectric Point: 5.8567

>NTDB_id=460157 JHS95_RS09135 WP_237301635.1 1798778..1800322(+) (luxO) [Vibrio parahaemolyticus strain LH80]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VTLAKHFLTTYAKEDKKKFSNIDTEAQHVIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVAHLPAQLTQKKTQARTVTPV
HVESSSPSNNLNGHNAPAMQTPPIEPVQPVQEAPAQQTQPTVGVETPSHSLSPYFNADGSIRPMWQVEREAIQNAIAYCD
GNVLNAAVMLELSPSTVYRKKQAWEADEVNFEQS

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=460157 JHS95_RS09135 WP_237301635.1 1798778..1800322(+) (luxO) [Vibrio parahaemolyticus strain LH80]
ATGAGACCAAGGGTGTTATTGGTAGAAGACTCTACCTCATTAGCCATACTTTATAAGCAATATGTGAAAGATGAGCCTTA
CGACATTTTCCATGTCGAGACAGGTCGTGATGCCATTCAATTCATTGAACGCAGCAAGCCTCAACTGATCATTTTGGATT
TAAAACTTCCAGACATGTCGGGGGAAGACGTGTTGGATTGGATCAATCAAAATGATATTCCCACTTCGGTCATCATCGCC
ACCGCACACGGCAGCGTCGACTTAGCTGTAAACTTGATTCAAAAAGGCGCTGAAGACTTCTTAGAAAAACCCATCAATGC
CGACCGTCTTAAAACCTCTGTGGCACTGCATCTAAAACGAGCCAAATTGGAAGACTTGGTAGAAAACATTCAGTCTACCT
TCGATCGCCACAACTATCATGGCTTCATTGGCTCAAGCCTACCGATGCAAGCGGTATACAAAACGATAGATGCCGTCGCA
CCAACCTCGGCCAGCGTCTTTATCGTCGGTGAAAGTGGCACGGGTAAAGAAGTGTGCGCCGAAGCCGTTCATCGCCAAAG
TGATCGCAGAGACAAACCTTTCATCGCCATAAACTGTGGTGCGATACCACGAGATTTGATGGAAAGTGAGATTTTCGGTC
ACGTTAAAGGGGCGTTTACTGGCGCAACCACAGACAGAAAAGGCGCAGCAACATTGGCCCACGGTGGGACGCTATTTCTC
GACGAGCTGTGTGAAATGGAACTGGAAATGCAGAAAAAGCTACTGCGCTTCTTACAAACGGGCACTTACACCCCACTTGG
CGGCACGAAAGAGATGAAAGTCGATGTACGTATCATTTGCGCCACCAACCGAGATCCACTTACAGAAGTGGAAGAAGGAC
GCTTTCGCGAAGACTTGTATTACCGTGTTCACGTTGTGCCGATTGATATGCCACCTTTGAGAGAAAGAGGAAGTGACATC
GTCACGTTAGCCAAGCATTTTCTCACGACTTACGCCAAAGAGGACAAGAAGAAATTCTCTAACATTGATACCGAAGCGCA
GCACGTGATCAAACATTACGAATGGCCTGGCAACGTAAGGCAGCTACAAAACATCATTCGTAATATCGTGGTACTCAACA
ATGATGAAAAAGTCACGGTGGCTCACCTACCCGCTCAGTTAACTCAAAAGAAAACGCAGGCAAGAACCGTAACCCCTGTG
CACGTCGAATCATCAAGCCCGAGCAACAATCTCAACGGACATAATGCTCCAGCGATGCAAACACCACCCATTGAACCAGT
GCAACCTGTTCAAGAGGCGCCTGCGCAACAAACACAGCCTACTGTCGGCGTTGAAACACCGAGTCATTCCTTGTCGCCGT
ACTTTAATGCAGACGGAAGTATCCGACCAATGTGGCAAGTCGAACGTGAAGCGATTCAAAACGCGATCGCTTATTGTGAT
GGTAACGTGCTCAATGCCGCTGTGATGCTGGAGCTAAGCCCTTCAACGGTCTATCGTAAAAAACAAGCGTGGGAAGCGGA
TGAAGTTAATTTCGAACAATCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory protein, Fis family (HTH_8)

(464-500)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.098

97.082

0.477