Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   H04402_RS05560 Genome accession   NC_017299
Coordinates   1210813..1211766 (+) Length   317 a.a.
NCBI ID   WP_014520257.1    Uniprot ID   -
Organism   Clostridium botulinum H04402 065     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1205813..1216766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H04402_RS05535 (H04402_01117) - 1205942..1206178 (+) 237 WP_014520253.1 SHOCT domain-containing protein -
  H04402_RS05540 (H04402_01118) - 1206448..1207149 (+) 702 WP_012704055.1 response regulator transcription factor -
  H04402_RS05545 (H04402_01119) - 1207149..1208555 (+) 1407 WP_014520254.1 HAMP domain-containing sensor histidine kinase -
  H04402_RS05550 (H04402_01120) - 1208895..1209581 (-) 687 WP_014520255.1 DNA alkylation repair protein -
  H04402_RS05555 (H04402_01121) - 1209809..1210567 (-) 759 WP_014520256.1 AraC family transcriptional regulator -
  H04402_RS05560 (H04402_01122) ceuB 1210813..1211766 (+) 954 WP_014520257.1 ABC transporter permease Machinery gene
  H04402_RS05565 (H04402_01123) - 1211756..1212706 (+) 951 WP_014520258.1 iron chelate uptake ABC transporter family permease subunit -
  H04402_RS05570 (H04402_01124) - 1212703..1213458 (+) 756 WP_014520259.1 ATP-binding cassette domain-containing protein -
  H04402_RS05575 (H04402_01125) - 1213532..1214476 (+) 945 WP_014520260.1 siderophore ABC transporter substrate-binding protein -
  H04402_RS05580 (H04402_01126) - 1214678..1215679 (+) 1002 WP_041926554.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34871.23 Da        Isoelectric Point: 9.9543

>NTDB_id=46008 H04402_RS05560 WP_014520257.1 1210813..1211766(+) (ceuB) [Clostridium botulinum H04402 065]
MKKRYLILALIILSICSIFIGVKDISFIDIFNSDDVKLKVLLISRIPRLISIIVVGVSMSIAGLIMQQISRNKFVSPDTA
STIDSAKLGVLVALMIFPSATITEKMIVSFIFSLLGTFLFMKILKKIKVKNSIFIPLVGIMLGNIIDSITTFFAYKYDLI
QSIASWLQGDFSLIIKGNYELIYFSLPLVVIAFIYANKFTVAGMGEDFSKNLGVNYNRIINIGLVIVALISSLVVITVGK
IPFLGLIVPNIVTLYKGDNLKNSLCSTALLGAVFLLGCDILGRLVIYPYEISIGLVVGVIGSIVFLYLLFRRNGNEV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=46008 H04402_RS05560 WP_014520257.1 1210813..1211766(+) (ceuB) [Clostridium botulinum H04402 065]
ATGAAAAAGAGATATTTAATTTTAGCATTAATTATTTTATCTATTTGTTCAATATTTATTGGAGTAAAAGATATTAGCTT
TATAGATATATTTAATTCAGATGATGTGAAGCTTAAGGTATTATTAATTAGTAGAATACCAAGACTTATAAGTATTATTG
TAGTAGGGGTTAGTATGAGTATAGCAGGACTTATTATGCAACAAATAAGTCGAAATAAATTTGTATCTCCAGATACAGCT
TCAACTATAGATAGTGCAAAGCTTGGGGTTTTAGTTGCTTTAATGATATTTCCTTCAGCAACTATTACTGAAAAAATGAT
AGTTTCCTTTATATTTTCTTTATTAGGTACATTCTTATTTATGAAAATTTTAAAGAAAATAAAAGTTAAAAATTCTATCT
TCATACCACTCGTAGGTATAATGCTTGGAAATATAATAGATTCAATAACTACGTTTTTTGCATATAAATATGATCTTATT
CAAAGTATTGCCTCTTGGCTTCAAGGTGATTTTTCTTTAATTATTAAAGGAAATTATGAACTTATATATTTTAGTCTACC
ACTTGTAGTCATAGCCTTTATTTATGCTAACAAATTCACAGTAGCAGGTATGGGAGAGGATTTTTCTAAGAATTTAGGTG
TTAATTATAACAGAATCATAAATATAGGACTTGTAATAGTAGCATTAATATCTTCACTAGTAGTTATTACTGTAGGAAAA
ATACCATTCCTAGGTCTTATAGTACCTAATATAGTTACTCTTTATAAAGGGGATAATTTAAAAAATAGTCTTTGTAGTAC
AGCATTGCTTGGAGCAGTATTTCTCTTAGGTTGTGACATATTAGGTAGGTTAGTTATTTATCCCTATGAGATATCTATAG
GACTTGTAGTTGGGGTTATAGGAAGTATAGTATTCCTTTATCTCTTGTTTAGGAGGAATGGCAATGAAGTGTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.125

98.107

0.502

Multiple sequence alignment