Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   JHS83_RS12055 Genome accession   NZ_CP068622
Coordinates   2586979..2588358 (-) Length   459 a.a.
NCBI ID   WP_005456064.1    Uniprot ID   Q87M29
Organism   Vibrio parahaemolyticus strain LH24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2581979..2593358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS83_RS12040 (JHS83_12015) - 2583237..2583446 (-) 210 WP_005494095.1 DUF1127 domain-containing protein -
  JHS83_RS12045 (JHS83_12020) - 2583545..2584471 (+) 927 WP_025501461.1 LysR substrate-binding domain-containing protein -
  JHS83_RS12050 (JHS83_12025) fusA 2584672..2586762 (-) 2091 WP_005456593.1 elongation factor G -
  JHS83_RS12055 (JHS83_12030) radA/sms 2586979..2588358 (-) 1380 WP_005456064.1 DNA repair protein RadA Machinery gene
  JHS83_RS12060 (JHS83_12035) - 2588495..2590843 (+) 2349 WP_021822854.1 PilZ domain-containing protein -
  JHS83_RS12065 (JHS83_12040) serB 2590886..2591866 (-) 981 WP_020841223.1 phosphoserine phosphatase -
  JHS83_RS12070 (JHS83_12045) - 2591958..2592563 (+) 606 WP_005481596.1 YtjB family periplasmic protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49221.64 Da        Isoelectric Point: 7.4131

>NTDB_id=460076 JHS83_RS12055 WP_005456064.1 2586979..2588358(-) (radA/sms) [Vibrio parahaemolyticus strain LH24]
MAKAKRAYVCNDCGADFPRWQGQCNACGAWNTITEVRIAASPTVARNERLSGYAGSATESKVQTLSEIDLQEVPRFTSGF
KELDRVLGGGVVPGAAILIGGNPGAGKSTLLLQTMCTLSGLMPTLYVTGEESLQQVAMRASRLGLPKEHLKMLSETNVDK
ICQIAEKEQPRIMVIDSIQVMHVSDVQSSPGSVAQVRESATALTRYAKQNNVAVFIVGHVTKDGTLAGPKVLEHIIDCSV
LLDGGTDSRFRTLRSHKNRFGAVNELGVFAMTGQGLKEVSNPSAIFLSRGEEETSGSSVMVVWEGTRPLLVEIQALVDYS
QLANPRRVAVGLEQNRLSLLLAVLHKHGGLQMADQDVFVNVVGGVKVTETSADLALVMALLSSFRDRPLPKDVVVFGEVG
LAGEIRPVPSGQERLNEAFKHGFKKAIVPAANMPKGGIPGMQIHGVKKLSEAIEAFDEL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=460076 JHS83_RS12055 WP_005456064.1 2586979..2588358(-) (radA/sms) [Vibrio parahaemolyticus strain LH24]
ATGGCGAAAGCAAAACGAGCGTATGTTTGTAATGATTGTGGCGCGGATTTTCCACGTTGGCAGGGACAATGTAATGCGTG
TGGTGCATGGAATACGATCACAGAGGTGCGCATTGCTGCTTCGCCAACCGTTGCTCGCAATGAACGCTTAAGCGGTTATG
CTGGTTCGGCGACAGAATCGAAAGTCCAAACCTTATCTGAAATCGATCTGCAAGAAGTGCCGCGATTCACTAGTGGTTTT
AAAGAGCTCGATCGTGTGCTTGGTGGTGGTGTCGTACCTGGTGCGGCGATTCTGATAGGTGGCAACCCTGGAGCGGGTAA
GTCGACGTTGCTTCTTCAAACTATGTGTACGTTATCAGGGCTGATGCCGACACTTTACGTTACGGGTGAGGAATCGCTTC
AACAGGTTGCGATGCGCGCGTCTCGTCTTGGTCTGCCAAAAGAGCACCTGAAGATGCTATCAGAAACCAACGTCGATAAA
ATTTGCCAAATTGCAGAGAAAGAGCAGCCCAGAATTATGGTGATTGACTCGATTCAGGTTATGCACGTTTCTGATGTTCA
ATCGTCACCGGGCAGTGTTGCTCAGGTGCGAGAATCTGCGACGGCACTGACGCGATACGCAAAACAGAACAATGTTGCGG
TATTTATTGTTGGTCACGTAACGAAAGATGGTACTCTTGCCGGCCCTAAAGTCCTTGAGCACATTATTGACTGTTCTGTC
TTGCTTGATGGCGGAACAGATAGTCGTTTCCGTACACTGCGCAGCCACAAAAACCGTTTTGGTGCGGTAAATGAATTAGG
CGTGTTTGCGATGACGGGGCAGGGACTGAAAGAAGTAAGTAACCCATCGGCGATTTTCCTTTCTCGTGGCGAAGAAGAGA
CGTCAGGATCTTCGGTCATGGTTGTGTGGGAAGGTACACGTCCTCTATTAGTAGAGATTCAAGCGCTGGTGGACTACTCG
CAATTGGCAAACCCTCGTCGCGTAGCGGTTGGTTTGGAGCAGAATCGTCTCTCCTTATTATTAGCCGTACTGCATAAGCA
CGGTGGTCTGCAAATGGCCGATCAAGACGTGTTTGTGAATGTGGTCGGCGGCGTTAAGGTAACAGAAACCAGTGCGGATC
TTGCTTTAGTGATGGCGTTACTATCAAGCTTTCGCGATCGTCCGTTGCCAAAAGATGTGGTGGTATTTGGCGAAGTTGGT
TTGGCTGGCGAGATTCGTCCGGTACCTAGTGGCCAAGAGCGTTTGAACGAGGCATTTAAGCACGGCTTCAAAAAGGCAAT
TGTCCCGGCTGCTAATATGCCAAAAGGTGGCATTCCGGGGATGCAAATCCACGGCGTTAAGAAGTTGTCAGAGGCTATTG
AGGCTTTTGACGAGCTGTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(83-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87M29

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.711

99.346

0.464
  radA Streptococcus mitis SK321

44.079

99.346

0.438
  radA Streptococcus pneumoniae Rx1

43.516

99.129

0.431
  radA Streptococcus pneumoniae D39

43.516

99.129

0.431
  radA Streptococcus pneumoniae R6

43.516

99.129

0.431
  radA Streptococcus pneumoniae TIGR4

43.516

99.129

0.431
  radA Streptococcus mitis NCTC 12261

43.516

99.129

0.431