Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV135_RS09240 Genome accession   NZ_CP056647
Coordinates   1955181..1955795 (+) Length   204 a.a.
NCBI ID   WP_047501141.1    Uniprot ID   A0A5A9DFT6
Organism   Citrobacter sp. RHBSTW-00229     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1950181..1960795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV135_RS09220 (HV135_09235) - 1950543..1952303 (-) 1761 WP_181220592.1 Lon protease family protein -
  HV135_RS09225 (HV135_09240) matP 1952489..1952941 (+) 453 WP_016152480.1 macrodomain Ter protein MatP -
  HV135_RS09230 (HV135_09245) ompA 1953039..1954097 (-) 1059 WP_181220591.1 porin OmpA -
  HV135_RS09235 (HV135_09250) sulA 1954455..1954964 (-) 510 WP_032931135.1 SOS-induced cell division inhibitor SulA -
  HV135_RS09240 (HV135_09255) sxy/tfoX 1955181..1955795 (+) 615 WP_047501141.1 TfoX/Sxy family DNA transformation protein Regulator
  HV135_RS09245 (HV135_09260) yccS 1955773..1957926 (-) 2154 WP_181220590.1 YccS family putative transporter -
  HV135_RS09250 (HV135_09265) - 1957945..1958391 (-) 447 WP_181220589.1 YccF domain-containing protein -
  HV135_RS09255 (HV135_09270) helD 1958517..1960571 (+) 2055 WP_181220588.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23198.55 Da        Isoelectric Point: 8.6113

>NTDB_id=460075 HV135_RS09240 WP_047501141.1 1955181..1955795(+) (sxy/tfoX) [Citrobacter sp. RHBSTW-00229]
MKEKSYARIYKSQEYLASLGTIHYRSLFGSYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=460075 HV135_RS09240 WP_047501141.1 1955181..1955795(+) (sxy/tfoX) [Citrobacter sp. RHBSTW-00229]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCAGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTTGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGGCGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAGAACCAGCAGCAGTTAGTGTCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATCTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGCTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGAGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5A9DFT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.652

98.529

0.686