Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JMY44_RS21130 Genome accession   NZ_CP068591
Coordinates   4434590..4435057 (+) Length   155 a.a.
NCBI ID   WP_000340171.1    Uniprot ID   -
Organism   Escherichia coli strain EF7-18-58     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4429590..4440057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMY44_RS21085 (JMY44_21085) rplP 4429700..4430110 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  JMY44_RS21090 (JMY44_21090) rpsC 4430123..4430824 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  JMY44_RS21095 (JMY44_21095) rplV 4430842..4431174 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  JMY44_RS21100 (JMY44_21100) rpsS 4431189..4431467 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  JMY44_RS21105 (JMY44_21105) rplB 4431484..4432305 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  JMY44_RS21110 (JMY44_21110) rplW 4432323..4432625 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  JMY44_RS21115 (JMY44_21115) rplD 4432622..4433227 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  JMY44_RS21120 (JMY44_21120) rplC 4433238..4433867 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  JMY44_RS21125 (JMY44_21125) rpsJ 4433900..4434211 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  JMY44_RS21130 (JMY44_21130) pilD 4434590..4435057 (+) 468 WP_000340171.1 A24 family peptidase Machinery gene
  JMY44_RS21135 (JMY44_21135) bfr 4435054..4435530 (-) 477 WP_000675515.1 bacterioferritin -
  JMY44_RS21140 (JMY44_21140) bfd 4435603..4435797 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  JMY44_RS21145 (JMY44_21145) tuf 4435980..4437164 (-) 1185 WP_000031783.1 elongation factor Tu -
  JMY44_RS21150 (JMY44_21150) fusA 4437235..4439349 (-) 2115 WP_000124700.1 elongation factor G -
  JMY44_RS21155 (JMY44_21155) rpsG 4439446..4439916 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16938.08 Da        Isoelectric Point: 8.1296

>NTDB_id=460019 JMY44_RS21130 WP_000340171.1 4434590..4435057(+) (pilD) [Escherichia coli strain EF7-18-58]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=460019 JMY44_RS21130 WP_000340171.1 4434590..4435057(+) (pilD) [Escherichia coli strain EF7-18-58]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361
  pilD Neisseria gonorrhoeae MS11

38.095

94.839

0.361