Detailed information NTG0460008

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JMY44_RS18085
• Genome accession: NZ_CP068591
• Coordinates: 3819526..3820518 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EF7-18-58
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3814526..3825518

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JMY44_RS18060 (JMY44_18060)	ygbN	3815181..3816545 (+)	1365	WP_000104439.1	GntP family transporter	-
JMY44_RS18065 (JMY44_18065)	-	3816584..3816820 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
JMY44_RS18070 (JMY44_18070)	-	3816831..3818258 (-)	1428	WP_000863223.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
JMY44_RS18075 (JMY44_18075)	-	3818258..3818851 (-)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
JMY44_RS18080 (JMY44_18080)	-	3818998..3819405 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
JMY44_RS18085 (JMY44_18085)	rpoS	3819526..3820518 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JMY44_RS18090 (JMY44_18090)	nlpD	3820581..3821675 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
JMY44_RS18095 (JMY44_18095)	pcm	3821860..3822486 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
JMY44_RS18100 (JMY44_18100)	surE	3822480..3823241 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
JMY44_RS18105 (JMY44_18105)	truD	3823222..3824271 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
JMY44_RS18110 (JMY44_18110)	ispF	3824268..3824747 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JMY44_RS18115 (JMY44_18115)	ispD	3824747..3825457 (-)	711	WP_000246136.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=460008 JMY44_RS18085 WP_000081550.1 3819526..3820518(-) (rpoS) [Escherichia coli strain EF7-18-58]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=460008 JMY44_RS18085 WP_000081550.1 3819526..3820518(-) (rpoS) [Escherichia coli strain EF7-18-58]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715