Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV164_RS14830 Genome accession   NZ_CP056597
Coordinates   3089408..3090022 (-) Length   204 a.a.
NCBI ID   WP_181625518.1    Uniprot ID   -
Organism   Citrobacter freundii strain RHBSTW-00334     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3084408..3095022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV164_RS14815 (HV164_14815) helD 3084632..3086686 (-) 2055 WP_181539818.1 DNA helicase IV -
  HV164_RS14820 (HV164_14820) - 3086812..3087258 (+) 447 WP_096757638.1 YccF domain-containing protein -
  HV164_RS14825 (HV164_14825) yccS 3087277..3089430 (+) 2154 WP_096759437.1 YccS family putative transporter -
  HV164_RS14830 (HV164_14830) sxy/tfoX 3089408..3090022 (-) 615 WP_181625518.1 TfoX/Sxy family DNA transformation protein Regulator
  HV164_RS14835 (HV164_14835) sulA 3090239..3090748 (+) 510 WP_096757640.1 SOS-induced cell division inhibitor SulA -
  HV164_RS14840 (HV164_14840) ompA 3091104..3092162 (+) 1059 WP_115259970.1 porin OmpA -
  HV164_RS14845 (HV164_14845) matP 3092261..3092713 (-) 453 WP_096757641.1 macrodomain Ter protein MatP -
  HV164_RS14850 (HV164_14850) - 3092899..3094659 (+) 1761 WP_181625519.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23169.77 Da        Isoelectric Point: 9.1849

>NTDB_id=459991 HV164_RS14830 WP_181625518.1 3089408..3090022(-) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00334]
MKNLSYAKIYKSQEYLASLGTISYRSLFGSYSLTVGDTVFAMVADGELYLRACEQSVQYCVKHSPVWLTFMKRGRPVILN
YYQVNDALWRNHPQLVSLSRYSLDAAVKEKQTRVSQHRLRELPNISFHLETLLSEAGINDEGTLRTLGAQMCWLKLLQIN
PSLTVKILYALEGAISGIHEAALPAVRRRELVEWVSSLKPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=459991 HV164_RS14830 WP_181625518.1 3089408..3090022(-) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00334]
ATGAAAAACCTCTCTTATGCCAAGATCTATAAATCACAAGAATATTTGGCCTCTTTAGGTACAATTAGCTACCGCTCTTT
ATTTGGCAGTTATAGCTTGACGGTGGGTGATACGGTCTTTGCAATGGTTGCCGACGGTGAGTTATACCTGCGGGCCTGTG
AGCAAAGCGTACAGTACTGTGTCAAACATTCCCCGGTCTGGTTGACGTTTATGAAGCGGGGACGTCCCGTGATACTCAAC
TATTATCAAGTTAATGATGCGCTGTGGCGAAACCATCCGCAGTTGGTGTCTTTATCACGATATTCGCTGGATGCCGCAGT
AAAAGAAAAACAGACGCGTGTTTCGCAACACCGGTTACGGGAACTGCCGAACATTTCCTTTCATCTGGAGACCCTACTGA
GTGAAGCCGGGATTAACGATGAGGGTACATTACGCACCCTGGGTGCTCAAATGTGTTGGCTAAAGCTTTTGCAAATTAAC
CCATCGCTGACAGTGAAAATTCTTTATGCGCTTGAGGGCGCAATCAGTGGGATACATGAAGCAGCACTCCCGGCGGTTCG
CCGCCGGGAGTTGGTTGAGTGGGTGAGTTCACTTAAGCCTGAACCGGGTTACTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.118

100

0.691