Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV167_RS14820 Genome accession   NZ_CP056595
Coordinates   3077555..3078169 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain RHBSTW-00342     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3072555..3083169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV167_RS14805 (HV167_14800) helD 3072779..3074833 (-) 2055 WP_071697312.1 DNA helicase IV -
  HV167_RS14810 (HV167_14805) - 3074959..3075405 (+) 447 WP_003035892.1 YccF domain-containing protein -
  HV167_RS14815 (HV167_14810) yccS 3075424..3077577 (+) 2154 WP_032941200.1 YccS family putative transporter -
  HV167_RS14820 (HV167_14815) sxy/tfoX 3077555..3078169 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  HV167_RS14825 (HV167_14820) sulA 3078387..3078896 (+) 510 WP_032948945.1 SOS-induced cell division inhibitor SulA -
  HV167_RS14830 (HV167_14825) ompA 3079254..3080312 (+) 1059 WP_003836839.1 porin OmpA -
  HV167_RS14835 (HV167_14830) matP 3080402..3080854 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  HV167_RS14840 (HV167_14835) - 3081040..3082800 (+) 1761 WP_071697311.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=459970 HV167_RS14820 WP_003035889.1 3077555..3078169(-) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00342]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=459970 HV167_RS14820 WP_003035889.1 3077555..3078169(-) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00342]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACAATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACACGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686