Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   KSO_RS18850 Genome accession   NC_020272
Coordinates   3867429..3867659 (-) Length   76 a.a.
NCBI ID   WP_004264650.1    Uniprot ID   A7Z0H7
Organism   Bacillus amyloliquefaciens IT-45     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3862429..3872659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSO_RS18840 (KSO_019120) spoVT 3863153..3863689 (-) 537 WP_004264646.1 stage V sporulation protein T -
  KSO_RS18845 (KSO_019125) mfd 3863826..3867359 (-) 3534 WP_015388787.1 transcription-repair coupling factor -
  KSO_RS18850 (KSO_019130) subA/fin 3867429..3867659 (-) 231 WP_004264650.1 anti-sigma-F factor Fin family protein Machinery gene
  KSO_RS18855 (KSO_019135) pth 3867721..3868287 (-) 567 WP_004264652.1 aminoacyl-tRNA hydrolase -
  KSO_RS18860 (KSO_019140) - 3868372..3868980 (-) 609 WP_004264654.1 50S ribosomal protein L25/general stress protein Ctc -
  KSO_RS18865 (KSO_019145) - 3869065..3870018 (-) 954 WP_004264656.1 ribose-phosphate diphosphokinase -
  KSO_RS18870 (KSO_019150) glmU 3870040..3871410 (-) 1371 WP_004264658.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  KSO_RS18875 (KSO_019155) spoVG 3871602..3871895 (-) 294 WP_004264660.1 septation regulator SpoVG -
  KSO_RS18880 (KSO_019160) ridA 3872091..3872471 (-) 381 WP_015388788.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8899.87 Da        Isoelectric Point: 5.8002

>NTDB_id=45994 KSO_RS18850 WP_004264650.1 3867429..3867659(-) (subA/fin) [Bacillus amyloliquefaciens IT-45]
MALHYFCRHCGFKVGSLEYSTVPTQSLGFQHLTNEERNDMISYKDNGDVHVLTICEDCQEALERNPHYHEHNTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=45994 KSO_RS18850 WP_004264650.1 3867429..3867659(-) (subA/fin) [Bacillus amyloliquefaciens IT-45]
ATGGCTTTGCATTATTTCTGCCGCCACTGCGGCTTTAAGGTAGGGAGCCTGGAATATTCAACGGTGCCGACACAGTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCATATAAAGACAATGGAGATGTCCATGTTCTTACAA
TTTGTGAAGACTGCCAAGAGGCGCTGGAACGCAATCCGCACTACCATGAACACAACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z0H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

86.842

100

0.868

Multiple sequence alignment