Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   JL476_RS07910 Genome accession   NZ_CP068586
Coordinates   1514311..1514907 (-) Length   198 a.a.
NCBI ID   WP_002779313.1    Uniprot ID   A0ABP2NPG9
Organism   Campylobacter coli strain CC19CH076     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1509311..1519907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL476_RS07890 (JL476_07895) - 1510066..1510830 (+) 765 WP_212145203.1 TIGR02757 family protein -
  JL476_RS07895 (JL476_07900) - 1510833..1511597 (+) 765 WP_002781157.1 TSUP family transporter -
  JL476_RS07900 (JL476_07905) ctsF 1511594..1512769 (-) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  JL476_RS07905 (JL476_07910) ctsE 1512756..1514318 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  JL476_RS07910 (JL476_07915) ctsX 1514311..1514907 (-) 597 WP_002779313.1 CDC27 family protein Machinery gene
  JL476_RS07915 (JL476_07920) ctsP 1514904..1515500 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  JL476_RS07920 (JL476_07925) ctsD 1515493..1516911 (-) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  JL476_RS07925 (JL476_07930) ctsR 1516889..1517200 (-) 312 WP_002779316.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23760.21 Da        Isoelectric Point: 5.2295

>NTDB_id=459938 JL476_RS07910 WP_002779313.1 1514311..1514907(-) (ctsX) [Campylobacter coli strain CC19CH076]
MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIACMLISFFMVQDFYKQKALALEALEYKKTLNWQITQAQIANEKNKIL
QERLSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSW
VLFAKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 597 bp        

>NTDB_id=459938 JL476_RS07910 WP_002779313.1 1514311..1514907(-) (ctsX) [Campylobacter coli strain CC19CH076]
ATGAATATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGCATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAGGCCTTAGCTT
TAGAAGCTTTAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTA
CAAGAAAGATTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGAT
TTTAAATATAAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGCTATCAAAAAGCCATGAATTTAGCTACTCAGTATT
ATGAAAACAAAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCCAATGACATCGATAGAAAAAATTCAGACTCATGG
GTTTTATTTGCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTA
TGGCTTGATTGAATTTGATAAGGAGATAGATGATTGA

Domains

Predicted by InterProScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(116-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

55.128

78.788

0.434