Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV178_RS15525 Genome accession   NZ_CP056573
Coordinates   3186846..3187460 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain RHBSTW-00370     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3181846..3192460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV178_RS15510 (HV178_15510) helD 3182070..3184124 (-) 2055 WP_048233407.1 DNA helicase IV -
  HV178_RS15515 (HV178_15515) - 3184250..3184696 (+) 447 WP_003035892.1 YccF domain-containing protein -
  HV178_RS15520 (HV178_15520) yccS 3184715..3186868 (+) 2154 WP_032941200.1 YccS family putative transporter -
  HV178_RS15525 (HV178_15525) sxy/tfoX 3186846..3187460 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  HV178_RS15530 (HV178_15530) sulA 3187678..3188187 (+) 510 WP_003035886.1 SOS-induced cell division inhibitor SulA -
  HV178_RS15535 (HV178_15535) ompA 3188545..3189603 (+) 1059 WP_003836839.1 porin OmpA -
  HV178_RS15540 (HV178_15540) matP 3189695..3190147 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  HV178_RS15545 (HV178_15545) - 3190333..3192093 (+) 1761 WP_003035878.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=459924 HV178_RS15525 WP_003035889.1 3186846..3187460(-) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00370]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=459924 HV178_RS15525 WP_003035889.1 3186846..3187460(-) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00370]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGAGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACCATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686