Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   JL476_RS05640 Genome accession   NZ_CP068586
Coordinates   1077128..1077433 (+) Length   101 a.a.
NCBI ID   WP_002790525.1    Uniprot ID   -
Organism   Campylobacter coli strain CC19CH076     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1072128..1082433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL476_RS05615 (JL476_05620) rpsR 1072486..1072746 (+) 261 WP_002777087.1 30S ribosomal protein S18 -
  JL476_RS05620 (JL476_05625) lon 1072802..1075177 (-) 2376 WP_170876373.1 endopeptidase La -
  JL476_RS05625 (JL476_05630) - 1075193..1075840 (-) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  JL476_RS05630 (JL476_05635) fliW 1076005..1076394 (+) 390 WP_002777093.1 flagellar assembly protein FliW -
  JL476_RS05635 (JL476_05640) proC 1076394..1077131 (+) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  JL476_RS05640 (JL476_05645) ctsT 1077128..1077433 (+) 306 WP_002790525.1 hypothetical protein Machinery gene
  JL476_RS05645 (JL476_05650) - 1077426..1078094 (+) 669 WP_002790524.1 hypothetical protein -
  JL476_RS05650 (JL476_05655) - 1078091..1078543 (+) 453 WP_002777117.1 hypothetical protein -
  JL476_RS05655 (JL476_05660) - 1078536..1079165 (-) 630 WP_002783358.1 uroporphyrinogen-III synthase -
  JL476_RS05660 (JL476_05665) thiE 1079143..1079775 (-) 633 WP_162284675.1 thiamine phosphate synthase -
  JL476_RS05665 (JL476_05670) thiD 1079765..1080577 (-) 813 WP_002822374.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  JL476_RS05670 (JL476_05675) - 1080577..1081260 (-) 684 WP_060785324.1 3-methyladenine DNA glycosylase -
  JL476_RS05675 (JL476_05680) - 1081257..1082018 (-) 762 WP_072212081.1 ATP-binding protein -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 12410.27 Da        Isoelectric Point: 6.0617

>NTDB_id=459918 JL476_RS05640 WP_002790525.1 1077128..1077433(+) (ctsT) [Campylobacter coli strain CC19CH076]
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFINDN
IFQFKKLHIQNQDYSLYFYDE

Nucleotide


Download         Length: 306 bp        

>NTDB_id=459918 JL476_RS05640 WP_002790525.1 1077128..1077433(+) (ctsT) [Campylobacter coli strain CC19CH076]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTATAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

48.98

97.03

0.475