Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV186_RS14580 Genome accession   NZ_CP056559
Coordinates   3030462..3031076 (-) Length   204 a.a.
NCBI ID   WP_181490378.1    Uniprot ID   -
Organism   Citrobacter freundii strain RHBSTW-00408     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3025462..3036076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV186_RS14565 (HV186_14570) helD 3025686..3027740 (-) 2055 WP_181490376.1 DNA helicase IV -
  HV186_RS14570 (HV186_14575) - 3027866..3028312 (+) 447 WP_096757638.1 YccF domain-containing protein -
  HV186_RS14575 (HV186_14580) yccS 3028331..3030484 (+) 2154 WP_181490377.1 YccS family putative transporter -
  HV186_RS14580 (HV186_14585) sxy/tfoX 3030462..3031076 (-) 615 WP_181490378.1 TfoX/Sxy family DNA transformation protein Regulator
  HV186_RS14585 (HV186_14590) sulA 3031293..3031802 (+) 510 WP_096757640.1 SOS-induced cell division inhibitor SulA -
  HV186_RS14590 (HV186_14595) ompA 3032158..3033204 (+) 1047 WP_181490379.1 porin OmpA -
  HV186_RS14595 (HV186_14600) matP 3033303..3033755 (-) 453 WP_096757641.1 macrodomain Ter protein MatP -
  HV186_RS14600 (HV186_14605) - 3033941..3035701 (+) 1761 WP_115258918.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23227.81 Da        Isoelectric Point: 9.1904

>NTDB_id=459875 HV186_RS14580 WP_181490378.1 3030462..3031076(-) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00408]
MKNLSYARIYKSQEYLASLGTISYRSLFGSYSLTVGDTVFAMVADGELYLRACEQSVQYCVKHSPVWLTFMKRGRPVILN
YYQVNDALWRNHPQLVSLSRYSLDAAVKEKQTRVSQHRLRELPNISFHLETLLSEAGINDEGTLRTLGAQMCWLKLLQIN
PSLTVKILYALEGAISGIHEAALPTVRRRELVEWVSSLKPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=459875 HV186_RS14580 WP_181490378.1 3030462..3031076(-) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00408]
ATGAAAAACCTCTCTTATGCCAGGATCTATAAATCACAAGAATATTTGGCCTCTTTAGGTACAATTAGCTACCGCTCTTT
ATTTGGCAGTTATAGCTTGACGGTGGGTGATACGGTCTTTGCAATGGTTGCCGACGGTGAGTTATACCTGCGGGCCTGTG
AGCAAAGCGTACAGTACTGTGTCAAACATTCCCCGGTCTGGTTGACGTTTATGAAGCGGGGACGTCCCGTGATACTCAAC
TATTATCAAGTTAATGATGCGCTGTGGCGAAACCATCCGCAGTTGGTGTCTTTATCACGATATTCGCTGGATGCCGCAGT
AAAAGAAAAACAGACGCGTGTTTCGCAACACCGGTTACGGGAACTGCCGAACATTTCCTTTCATCTGGAGACACTACTGA
GTGAAGCCGGGATTAACGATGAGGGTACATTACGCACCCTGGGTGCTCAAATGTGTTGGCTAAAGCTTTTGCAAATTAAC
CCATCGCTGACAGTGAAAATTCTTTACGCGCTTGAGGGCGCAATCAGTGGGATACATGAAGCTGCACTCCCGACGGTTCG
CCGCCGGGAGTTGGTTGAGTGGGTGAGTTCACTTAAGCCTGAACCGGGTTACTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.608

100

0.696