Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   JL477_RS06295 Genome accession   NZ_CP068567
Coordinates   1195741..1197543 (-) Length   600 a.a.
NCBI ID   WP_212147277.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CC19PF065     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1190741..1202543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL477_RS06270 (JL477_06270) - 1190866..1192065 (+) 1200 WP_126211904.1 MFS transporter -
  JL477_RS06275 (JL477_06275) ciaC 1192121..1192441 (+) 321 WP_002860457.1 invasion antigen CiaC -
  JL477_RS06280 (JL477_06280) hemE 1192625..1193647 (+) 1023 WP_167842862.1 uroporphyrinogen decarboxylase -
  JL477_RS06285 (JL477_06285) - 1193644..1194546 (+) 903 WP_052797627.1 radical SAM protein -
  JL477_RS06290 (JL477_06290) - 1194543..1195739 (-) 1197 WP_212147279.1 hypothetical protein -
  JL477_RS06295 (JL477_06295) uvrC 1195741..1197543 (-) 1803 WP_212147277.1 excinuclease ABC subunit UvrC Machinery gene
  JL477_RS06300 (JL477_06300) - 1197536..1198030 (-) 495 WP_052781672.1 hypothetical protein -
  JL477_RS06305 (JL477_06305) guaA 1198169..1199704 (+) 1536 WP_052781671.1 glutamine-hydrolyzing GMP synthase -
  JL477_RS06310 (JL477_06310) - 1199789..1201249 (+) 1461 WP_052781670.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69609.73 Da        Isoelectric Point: 9.4947

>NTDB_id=459837 JL477_RS06295 WP_212147277.1 1195741..1197543(-) (uvrC) [Campylobacter jejuni strain CC19PF065]
MTKENLENELKTLPNSTGVYQYFNQEGKLLYVGKAKNLKNRVKSYFAFTPNLHANPRNSLRIQKMIEETAHLEFIATNSE
ADALILENSFIKQLHPKYNILLRDDKTYPYIYVDFEEEFPRFEITRKLVKKSKIKYFGPFFKGARELLDALYLYYPLKQK
ASCKSPCIFYQISRCLAPCDKLISKEKYLEILDEAIHALLNPSVLLKNLEKQMLVLAQNENYEEAAKVRDQIATIKDLEV
KVEIDIAKLEDFEVFALAFKNSVLSTLRFVVQNGKIISANSKITPIKNDIQWDKNEIYKQLILENFSMDIPLLANVIYVY
EEFEDRVLLEEILSQRFDKKISIKIPKIGEKRRICDLAFQNALLNIEKEQKNHDFTIQKELKFYFELENLPNDIEIFDNS
HLQGVANVGAMVTYRINSWDKSKYRKFHLKHKNDYDQMREVLTRRALDFDKMPPPDLWLIDGGKVLLDLAKEIILSTGAN
VDILAISKEKIDAKAHRAKGGAKDKIHSLKGEFSLSINDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANLGLS
SGVIQKLLAYYGNFESIYKADFKDLAMLVGKKAAQKIKEN

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=459837 JL477_RS06295 WP_212147277.1 1195741..1197543(-) (uvrC) [Campylobacter jejuni strain CC19PF065]
TTGACTAAAGAGAATTTAGAAAATGAGTTAAAAACTCTTCCTAATAGCACTGGCGTTTATCAATACTTCAATCAAGAAGG
AAAGCTTTTATATGTAGGCAAGGCTAAAAATCTTAAAAATCGTGTCAAATCTTATTTTGCCTTTACTCCAAATTTACATG
CAAATCCAAGAAATTCTTTAAGAATTCAAAAAATGATTGAAGAAACAGCGCATTTGGAATTTATTGCTACTAATTCAGAG
GCTGATGCTTTGATTTTAGAAAATTCTTTTATCAAACAACTGCATCCAAAATATAATATTTTGCTAAGAGATGATAAAAC
TTATCCTTATATTTATGTGGATTTTGAAGAAGAATTTCCACGCTTTGAGATCACTAGAAAATTAGTAAAAAAAAGCAAAA
TTAAATATTTTGGCCCTTTTTTTAAAGGCGCTAGAGAGCTTTTAGATGCGCTTTATTTATACTATCCTTTAAAGCAAAAA
GCAAGTTGTAAATCCCCTTGTATTTTTTATCAAATTTCTCGTTGTCTTGCGCCTTGTGATAAACTCATCAGCAAAGAAAA
ATACCTTGAAATTTTAGATGAGGCTATACACGCACTTTTAAATCCTAGTGTTTTGCTTAAAAACTTAGAAAAACAAATGC
TTGTTTTAGCACAAAATGAAAATTACGAAGAAGCAGCTAAAGTAAGAGATCAGATTGCAACGATTAAAGATTTGGAAGTT
AAGGTTGAAATAGATATTGCAAAATTAGAAGATTTTGAAGTATTTGCTTTAGCTTTTAAAAATTCCGTGCTTTCAACCTT
GCGTTTTGTGGTGCAAAATGGAAAAATTATCAGTGCAAATTCTAAGATTACTCCTATAAAAAATGATATACAATGGGATA
AAAATGAAATTTATAAGCAACTGATTTTAGAAAATTTTAGCATGGATATTCCTTTGCTTGCAAATGTTATTTATGTTTAT
GAAGAATTTGAAGATAGAGTGCTTTTAGAAGAAATTTTAAGCCAAAGGTTTGATAAAAAAATCAGTATTAAAATCCCTAA
AATAGGAGAAAAAAGAAGAATTTGTGATTTGGCTTTTCAAAATGCCCTTTTAAATATAGAAAAAGAGCAAAAAAATCATG
ATTTTACTATACAAAAAGAATTAAAGTTTTATTTTGAGCTTGAAAATTTACCAAATGATATAGAAATTTTTGATAATTCT
CATTTGCAAGGTGTGGCAAATGTTGGAGCTATGGTAACTTATAGAATAAATTCTTGGGATAAGTCAAAATATCGAAAATT
TCATTTAAAACATAAAAATGACTATGATCAAATGCGTGAAGTTTTAACGCGTAGGGCTTTGGATTTTGATAAAATGCCAC
CTCCTGATTTATGGCTTATAGATGGGGGAAAGGTTTTGCTTGATTTGGCTAAAGAAATTATTTTAAGCACTGGGGCAAAT
GTTGATATTTTAGCTATTTCAAAAGAAAAAATCGATGCAAAAGCACATAGAGCTAAAGGAGGCGCTAAGGATAAAATTCA
TTCTTTAAAAGGAGAATTTAGTCTAAGTATTAACGATAAAAAACTACAATTCTTGCAGAAATTAAGAGATGAAGCACACC
GTTTTGCTATCAGCTTTCATCAAAATACTAAGAAAAAACAGGACTTGAAAAGTTCTAAGCTTGCAAATTTAGGACTTAGT
TCTGGAGTTATACAAAAACTTTTAGCGTATTATGGAAATTTTGAATCTATATATAAGGCTGATTTTAAAGATCTTGCAAT
GCTTGTGGGTAAGAAAGCGGCGCAAAAGATAAAGGAAAATTGA

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(18-99)

UvrB/uvrC motif (UVR)

(205-237)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-537)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

47.079

97

0.457