Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   JL477_RS03100 Genome accession   NZ_CP068567
Coordinates   590489..590872 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni strain CC19PF065     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 585489..595872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL477_RS03080 (JL477_03080) - 585568..587502 (-) 1935 WP_212147147.1 RNB domain-containing ribonuclease -
  JL477_RS03085 (JL477_03085) ilvC 587621..588643 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  JL477_RS03090 (JL477_03090) - 588647..589729 (+) 1083 WP_126207842.1 divergent polysaccharide deacetylase family protein -
  JL477_RS03095 (JL477_03095) dprA 589719..590492 (+) 774 WP_167842727.1 DNA-processing protein DprA Machinery gene
  JL477_RS03100 (JL477_03100) dprB 590489..590872 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  JL477_RS03105 (JL477_03105) - 590901..591740 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  JL477_RS03110 (JL477_03110) msrA 591916..592413 (-) 498 WP_070316425.1 peptide-methionine (S)-S-oxide reductase MsrA -
  JL477_RS03115 (JL477_03115) ppa 592455..592973 (-) 519 WP_002871349.1 inorganic diphosphatase -
  JL477_RS03120 (JL477_03120) adk 592983..593561 (-) 579 WP_052794065.1 adenylate kinase -
  JL477_RS03125 (JL477_03125) aspS 593558..595309 (-) 1752 WP_167842728.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=459818 JL477_RS03100 WP_002852281.1 590489..590872(+) (dprB) [Campylobacter jejuni strain CC19PF065]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=459818 JL477_RS03100 WP_002852281.1 590489..590872(+) (dprB) [Campylobacter jejuni strain CC19PF065]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGCGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATTAAAAATTTACTTAAAATACATGAGATTTCTTTAC
TCATTGTTGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGTGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449