Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   JMJ69_RS07660 Genome accession   NZ_CP068566
Coordinates   1482308..1485130 (+) Length   940 a.a.
NCBI ID   WP_002796781.1    Uniprot ID   -
Organism   Campylobacter coli strain CC19DZ037     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1477308..1490130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMJ69_RS07640 (JMJ69_07640) - 1477629..1478228 (-) 600 WP_002778236.1 phosphoribosylanthranilate isomerase -
  JMJ69_RS07645 (JMJ69_07645) trpD 1478215..1479807 (-) 1593 WP_131235557.1 anthranilate phosphoribosyltransferase -
  JMJ69_RS07650 (JMJ69_07650) - 1479809..1481050 (-) 1242 WP_002778232.1 anthranilate synthase component I family protein -
  JMJ69_RS07655 (JMJ69_07655) - 1481435..1482220 (+) 786 WP_002843066.1 sulfite exporter TauE/SafE family protein -
  JMJ69_RS07660 (JMJ69_07660) uvrA 1482308..1485130 (+) 2823 WP_002796781.1 excinuclease ABC subunit UvrA Machinery gene
  JMJ69_RS07665 (JMJ69_07665) - 1485132..1485665 (+) 534 WP_134162879.1 hypothetical protein -
  JMJ69_RS07670 (JMJ69_07670) - 1485687..1486364 (+) 678 WP_002778226.1 hypothetical protein -
  JMJ69_RS07675 (JMJ69_07675) - 1486377..1486967 (+) 591 WP_002778225.1 hypothetical protein -
  JMJ69_RS07680 (JMJ69_07680) - 1486960..1487403 (+) 444 WP_002778224.1 YqaA family protein -
  JMJ69_RS07685 (JMJ69_07685) polA 1487467..1490106 (+) 2640 WP_002780668.1 DNA polymerase I -

Sequence

Protein


Download         Length: 940 a.a.        Molecular weight: 105066.27 Da        Isoelectric Point: 8.4459

>NTDB_id=459800 JMJ69_RS07660 WP_002796781.1 1482308..1485130(+) (uvrA) [Campylobacter coli strain CC19DZ037]
MNDTIKIIGAKENNLKNIHLEIPKNKLIVFTGLSGSGKSTLAFGTLYAEGQRRYIESLSAYARQFLDKVGKPDVDKIEGL
TPAIAIDQKTTSKNPRSTVGTITEIYDYLRLLYARVGIQHCHQCGQKISSMSASDIVGEILKFPKGAKIIIYAPLVREKK
GTYADLLENLRNKGYVRAQIDGVLVRLDEDIELSKTKKHTIKLVIDRLEIQEDLLSRLASDIEKGLEESFGEIEIEVLNP
DEVGLNKHYHFSEHSACFACKISFVPLEPLSFSFNSPKGACEACDGLGIRYTLDMKKIIDESLSLENGAVKIMYGFNKSY
YYKFLIAFCEQNEIPIKLPFAELSEEQKRLVLYGNAKTIDFFWKRNRLKRTFEGVVKMAYEMLKDEKDLAEYMSEKICKD
CAGHRLKPESLAVKVASKGLGEILDMSIEDSTSFFANKKNFSYLSEQERLISEPILKEINERLFFLYDVGLGYLSLGRDA
RTISGGEAQRIRIASQIGSGLSGVMYVLDEPSIGLHERDTAKLIKTLRNLQQKGNTLIVVEHDKMTIEEADFIVDIGPKA
GKFGGEVVFAGTYKELLKSKSETALYMNGKKQISQLQNREQKEWLELKNVNINNIKDLSVSFPLQNLVAITGVSGSGKSS
LILQTLLPFAQEELNRAKKVKKLGGVQIEGLEKLDKVIYLDQSPIGRTPRSNPATYTGAMDEIRNLFAATKEAKMRGYKA
GRFSFNVKGGRCEKCSGDGEIKIEMHFLPDVMVVCDTCHGKRYNDATLEIKYKGKNISEILNMSVLEASEFFAAVPKIKQ
KLDTLVKVGLDYLTLGQNATTLSGGEAQRIKLAKELSRSDTGKTLYILDEPTTGLHFEDVNKLILVLQHLVDLKNSVFVI
EHNLDVIKNADYIIDMGPEGGVKGGKIISTGSVEKVAKDHKKTKSYTGYYLDLELKNAKS

Nucleotide


Download         Length: 2823 bp        

>NTDB_id=459800 JMJ69_RS07660 WP_002796781.1 1482308..1485130(+) (uvrA) [Campylobacter coli strain CC19DZ037]
ATGAATGATACGATAAAAATCATTGGCGCAAAGGAAAATAATCTTAAAAATATTCATCTTGAAATTCCAAAAAATAAACT
CATTGTTTTTACAGGATTAAGCGGTAGTGGAAAATCAACCCTTGCTTTTGGCACACTCTATGCCGAAGGTCAACGCCGTT
ATATAGAAAGTTTGAGTGCTTATGCAAGACAATTTTTAGACAAGGTAGGCAAACCCGATGTGGATAAAATCGAAGGTTTA
ACCCCTGCTATTGCAATTGATCAAAAAACCACTTCTAAAAATCCGCGTTCTACAGTCGGAACCATCACTGAAATTTATGA
TTATTTAAGACTTTTATATGCAAGAGTGGGCATTCAGCATTGCCATCAATGCGGACAAAAAATCTCATCTATGAGTGCAA
GTGATATAGTAGGAGAAATTTTAAAATTTCCAAAAGGAGCTAAAATCATCATCTACGCTCCTTTGGTGCGTGAAAAAAAA
GGAACTTATGCGGATTTACTTGAAAATTTGCGCAATAAAGGCTATGTAAGAGCGCAAATTGATGGGGTTTTAGTAAGACT
TGATGAAGATATAGAACTTTCAAAAACTAAAAAACATACGATAAAACTCGTCATTGATAGACTCGAAATACAAGAAGATC
TACTTTCTCGCCTTGCAAGCGATATAGAAAAAGGTTTGGAAGAAAGCTTTGGAGAAATCGAGATAGAAGTCTTAAATCCC
GATGAAGTAGGACTTAATAAGCACTATCACTTTAGCGAACACTCCGCTTGCTTTGCTTGTAAAATTTCCTTTGTTCCTCT
TGAGCCTTTAAGTTTTTCTTTTAACTCTCCAAAAGGGGCTTGTGAAGCCTGTGATGGACTTGGAATTCGCTATACCCTAG
ATATGAAAAAAATCATCGATGAAAGCCTAAGTCTTGAAAATGGCGCGGTAAAAATAATGTATGGATTTAACAAAAGCTAT
TATTATAAATTTTTAATTGCTTTTTGCGAGCAAAATGAAATTCCTATTAAACTCCCTTTTGCTGAACTTAGCGAAGAACA
AAAACGCCTTGTGCTATACGGAAATGCAAAAACCATTGACTTTTTTTGGAAAAGAAATCGCCTCAAACGCACCTTTGAAG
GTGTGGTAAAAATGGCTTATGAAATGCTAAAAGATGAAAAAGACTTAGCAGAATACATGAGTGAAAAAATTTGCAAAGAT
TGTGCAGGTCATCGTTTAAAACCTGAAAGTTTAGCCGTAAAAGTAGCCTCTAAAGGACTAGGCGAAATTTTAGATATGAG
TATAGAAGATAGCACTAGCTTTTTTGCAAATAAGAAAAATTTCTCTTATTTAAGCGAGCAAGAAAGACTTATCTCTGAAC
CCATATTAAAAGAAATCAACGAAAGACTTTTCTTTTTATATGATGTAGGACTAGGCTATTTATCTTTAGGACGCGATGCA
AGGACGATTAGCGGAGGTGAGGCACAAAGAATTCGCATCGCTTCACAAATTGGCAGTGGTTTAAGTGGGGTGATGTATGT
TTTAGATGAACCTAGTATCGGACTTCATGAAAGAGATACAGCAAAACTCATTAAAACCTTAAGAAATTTACAACAAAAAG
GCAATACTCTAATTGTCGTAGAGCACGATAAAATGACTATAGAAGAAGCTGATTTTATCGTAGATATTGGCCCAAAAGCA
GGAAAATTTGGAGGCGAAGTGGTATTTGCTGGAACTTATAAAGAACTTTTAAAAAGCAAAAGTGAAACCGCACTTTATAT
GAACGGCAAGAAGCAAATTTCACAGCTTCAAAACAGAGAACAAAAAGAATGGCTAGAACTTAAAAATGTAAATATCAATA
ATATCAAAGATCTAAGCGTTTCTTTTCCTTTGCAAAATTTAGTCGCGATCACAGGTGTTTCAGGATCTGGAAAAAGCTCT
CTCATACTTCAAACCTTACTGCCTTTTGCACAAGAAGAATTAAACCGCGCCAAAAAAGTAAAGAAATTAGGTGGGGTGCA
GATTGAAGGGCTTGAAAAACTAGATAAGGTTATTTATCTTGATCAAAGTCCTATAGGACGAACCCCGCGATCAAATCCTG
CTACTTATACAGGTGCCATGGATGAAATTCGCAATCTTTTTGCTGCTACCAAAGAAGCTAAAATGCGAGGCTATAAAGCG
GGGCGTTTTTCTTTTAATGTTAAGGGTGGAAGATGTGAGAAATGCAGTGGCGATGGAGAGATTAAAATAGAAATGCACTT
CTTGCCCGATGTAATGGTGGTTTGCGATACTTGCCATGGCAAACGCTATAATGATGCCACACTAGAGATTAAATACAAAG
GTAAAAATATCAGTGAAATTTTAAATATGAGCGTTTTAGAAGCAAGTGAATTTTTTGCAGCTGTGCCAAAAATCAAACAA
AAACTTGATACCTTAGTAAAAGTCGGACTTGATTATCTTACCCTAGGACAAAATGCAACGACTTTAAGTGGGGGTGAAGC
GCAAAGGATAAAACTTGCAAAAGAATTAAGCCGCAGTGACACAGGAAAAACGCTTTACATACTTGATGAGCCGACCACAG
GGCTACATTTTGAAGATGTCAATAAACTCATTTTAGTTTTACAACACTTAGTCGATCTTAAAAATTCTGTTTTTGTGATA
GAGCATAATTTAGATGTGATTAAAAATGCTGATTATATTATCGATATGGGTCCAGAAGGCGGAGTAAAGGGTGGAAAAAT
CATTAGTACAGGAAGCGTGGAAAAAGTTGCAAAAGATCATAAGAAAACAAAATCTTATACAGGATATTATTTGGATTTAG
AGCTTAAAAACGCAAAGAGTTAA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(294-386)

UvrA interaction domain (UvrA_inter)

(132-238)

ABC transporter (ABC_tran)

(616-852)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

52.471

100

0.531
  uvrA Streptococcus pneumoniae TIGR4

52.471

100

0.531
  uvrA Streptococcus pneumoniae D39

52.471

100

0.531