Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   JMJ69_RS06285 Genome accession   NZ_CP068566
Coordinates   1210235..1210615 (-) Length   126 a.a.
NCBI ID   WP_002776373.1    Uniprot ID   A0ABN0ERI9
Organism   Campylobacter coli strain CC19DZ037     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1205235..1215615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMJ69_RS06260 (JMJ69_06260) aspS 1205748..1207499 (+) 1752 WP_085839027.1 aspartate--tRNA ligase -
  JMJ69_RS06265 (JMJ69_06265) - 1207496..1208071 (+) 576 WP_002781658.1 adenylate kinase -
  JMJ69_RS06270 (JMJ69_06270) ppa 1208081..1208599 (+) 519 WP_002776378.1 inorganic diphosphatase -
  JMJ69_RS06275 (JMJ69_06275) msrA 1208647..1209147 (+) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  JMJ69_RS06280 (JMJ69_06280) - 1209370..1210224 (-) 855 WP_370530282.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  JMJ69_RS06285 (JMJ69_06285) dprB 1210235..1210615 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX Machinery gene
  JMJ69_RS06290 (JMJ69_06290) dprA 1210612..1211382 (-) 771 WP_052777121.1 DNA-processing protein DprA Machinery gene
  JMJ69_RS06295 (JMJ69_06295) - 1211372..1212424 (-) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  JMJ69_RS06300 (JMJ69_06300) ilvC 1212427..1213449 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  JMJ69_RS06305 (JMJ69_06305) - 1213572..1215506 (+) 1935 WP_002781664.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13949.38 Da        Isoelectric Point: 9.5520

>NTDB_id=459795 JMJ69_RS06285 WP_002776373.1 1210235..1210615(-) (dprB) [Campylobacter coli strain CC19DZ037]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=459795 JMJ69_RS06285 WP_002776373.1 1210235..1210615(-) (dprB) [Campylobacter coli strain CC19DZ037]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421