Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV194_RS15160 Genome accession   NZ_CP056527
Coordinates   3146983..3147597 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain RHBSTW-00435     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3141983..3152597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV194_RS15145 helD 3142207..3144261 (-) 2055 WP_061547834.1 DNA helicase IV -
  HV194_RS15150 - 3144387..3144833 (+) 447 WP_003035892.1 YccF domain-containing protein -
  HV194_RS15155 yccS 3144852..3147005 (+) 2154 WP_032941200.1 YccS family putative transporter -
  HV194_RS15160 sxy/tfoX 3146983..3147597 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  HV194_RS15165 sulA 3147815..3148324 (+) 510 WP_032948945.1 SOS-induced cell division inhibitor SulA -
  HV194_RS15170 ompA 3148682..3149728 (+) 1047 WP_003035883.1 porin OmpA -
  HV194_RS15175 matP 3149818..3150270 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  HV194_RS15180 - 3150456..3152216 (+) 1761 WP_061547833.1 AAA family ATPase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=459783 HV194_RS15160 WP_003035889.1 3146983..3147597(-) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00435]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=459783 HV194_RS15160 WP_003035889.1 3146983..3147597(-) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00435]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGTGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACAATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686